View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16176_low_17 (Length: 266)
Name: NF16176_low_17
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16176_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 21435779 - 21435520
Alignment:
| Q |
1 |
caacagaagctccttgaacacttctgttaggaaatcaaaggtgccattgattcaactgttgttgactgtttgaatattgtgtagcgcatacgttttagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21435779 |
caacagaagctccttgaacacttctgttaggaaatcaaaggtgccattgattcaactgttgttgactgtttgaatattgtgtaccgcatacgttttagtt |
21435680 |
T |
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| Q |
101 |
tgaaggcgtgtccgatgtccatgttagatattcctgtctatcactgtttcatcaactgttacttaaatgcaatatgtttaacacctgatactataattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21435679 |
tgaaggcgtgtccgatgtccatgttagatattcctgtctatcactgtttcatcaactgttacttaaatgcaatatgtttaacacctgatactataattga |
21435580 |
T |
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| Q |
201 |
agtacttagttgacgaaaccaatagaataatcaaaatctttcactcattaaactcttcat |
260 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
21435579 |
agtacttagttgacgaaaccaatagaatacgccaaatctttcactcattaaactcttcat |
21435520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 27154269 - 27154195
Alignment:
| Q |
190 |
actataattgaagtacttagttgacgaaaccaatagaataatcaaaatctttcactcattaaactcttcatttct |
264 |
Q |
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||||||||||||||| |||| ||| |||| ||||||||||| ||||||||| || || |||| ||| |||||||| |
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| T |
27154269 |
actataattgaagtaattaggtgaggaaagcaatagaataagcaaaatcttgcattccttaacctcatcatttct |
27154195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39129286 - 39129328
Alignment:
| Q |
1 |
caacagaagctccttgaacacttctgttaggaaatcaaaggtg |
43 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
39129286 |
caacagaagttccttgaacacttctgttaagaaatcaaaggtg |
39129328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 39495814 - 39495773
Alignment:
| Q |
2 |
aacagaagctccttgaacacttctgttaggaaatcaaaggtg |
43 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
39495814 |
aacagaagttccttgaacacttctgttaagaaatcaaaggtg |
39495773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 26956799 - 26956835
Alignment:
| Q |
226 |
aataatcaaaatctttcactcattaaactcttcattt |
262 |
Q |
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||||| |||||||||||| |||||||||||||||||| |
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| T |
26956799 |
aataaacaaaatctttcattcattaaactcttcattt |
26956835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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