View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16176_low_2 (Length: 531)

Name: NF16176_low_2
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16176_low_2
NF16176_low_2
[»] chr4 (11 HSPs)
chr4 (198-304)||(35348793-35348900)
chr4 (199-293)||(39056422-39056517)
chr4 (220-293)||(36846583-36846656)
chr4 (200-274)||(35350151-35350226)
chr4 (200-293)||(26631243-26631337)
chr4 (195-283)||(26629784-26629873)
chr4 (190-270)||(1519799-1519880)
chr4 (222-293)||(26491438-26491509)
chr4 (200-274)||(39057810-39057885)
chr4 (200-283)||(1521228-1521312)
chr4 (220-304)||(37106263-37106347)
[»] chr5 (12 HSPs)
chr5 (200-311)||(10735761-10735873)
chr5 (198-322)||(35047415-35047539)
chr5 (195-311)||(41144524-41144641)
chr5 (195-293)||(10736962-10737061)
chr5 (200-290)||(1103995-1104086)
chr5 (200-274)||(28702567-28702642)
chr5 (200-274)||(35081480-35081555)
chr5 (222-274)||(4127296-4127348)
chr5 (242-311)||(11797539-11797608)
chr5 (200-283)||(1102616-1102700)
chr5 (222-304)||(41143261-41143343)
chr5 (199-293)||(4124753-4124849)
[»] chr8 (13 HSPs)
chr8 (196-304)||(28291289-28291398)
chr8 (200-304)||(43203293-43203398)
chr8 (404-462)||(13363195-13363253)
chr8 (195-283)||(31845828-31845917)
chr8 (199-293)||(31844365-31844460)
chr8 (220-283)||(43202115-43202178)
chr8 (219-269)||(24306173-24306223)
chr8 (200-259)||(24853385-24853444)
chr8 (410-462)||(29738772-29738824)
chr8 (410-462)||(29738852-29738904)
chr8 (200-307)||(38697866-38697974)
chr8 (202-259)||(3138918-3138976)
chr8 (198-285)||(28291397-28291485)
[»] scaffold0053 (1 HSPs)
scaffold0053 (71-202)||(5248-5382)
[»] chr6 (10 HSPs)
chr6 (201-304)||(11968490-11968594)
chr6 (417-462)||(13504323-13504368)
chr6 (195-274)||(11967241-11967321)
chr6 (195-282)||(30232941-30233029)
chr6 (200-274)||(30231476-30231551)
chr6 (197-282)||(138241-138327)
chr6 (197-282)||(146262-146348)
chr6 (200-274)||(35037131-35037206)
chr6 (200-259)||(7312340-7312400)
chr6 (200-274)||(136625-136700)
[»] chr1 (15 HSPs)
chr1 (200-311)||(12665789-12665901)
chr1 (200-290)||(48528924-48529015)
chr1 (404-462)||(27689728-27689786)
chr1 (404-462)||(30551206-30551264)
chr1 (197-308)||(7306264-7306376)
chr1 (200-266)||(48527532-48527599)
chr1 (404-462)||(22766453-22766511)
chr1 (404-462)||(37624187-37624245)
chr1 (417-462)||(23081770-23081815)
chr1 (200-283)||(26287818-26287902)
chr1 (197-294)||(7304807-7304905)
chr1 (198-270)||(26286408-26286481)
chr1 (195-270)||(5611719-5611795)
chr1 (200-270)||(5613132-5613203)
chr1 (236-283)||(18821773-18821820)
[»] chr7 (8 HSPs)
chr7 (203-293)||(43442787-43442878)
chr7 (200-311)||(669394-669506)
chr7 (200-293)||(10955843-10955937)
chr7 (201-274)||(10957197-10957271)
chr7 (201-266)||(43441345-43441411)
chr7 (200-274)||(26135639-26135714)
chr7 (242-293)||(35295740-35295791)
chr7 (198-282)||(26146742-26146827)
[»] chr3 (4 HSPs)
chr3 (213-311)||(37415006-37415105)
chr3 (197-308)||(37416447-37416559)
chr3 (410-462)||(34902608-34902660)
chr3 (245-307)||(14745210-14745272)
[»] chr2 (12 HSPs)
chr2 (200-308)||(1309396-1309505)
chr2 (404-462)||(41296062-41296120)
chr2 (195-282)||(1147742-1147830)
chr2 (224-308)||(1310677-1310761)
chr2 (410-462)||(10367739-10367791)
chr2 (200-274)||(1149231-1149306)
chr2 (404-462)||(43789964-43790022)
chr2 (198-271)||(40556936-40557010)
chr2 (410-462)||(12959263-12959315)
chr2 (410-481)||(37868605-37868679)
chr2 (199-304)||(25559279-25559385)
chr2 (195-259)||(12095269-12095334)
[»] scaffold0092 (1 HSPs)
scaffold0092 (203-312)||(39825-39935)
[»] scaffold0219 (1 HSPs)
scaffold0219 (200-284)||(8223-8308)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 198 - 304
Target Start/End: Original strand, 35348793 - 35348900
Alignment:
Q  198 ttggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttg 296  Q
    |||||||||||| | ||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||| |    
T  35348793 ttggcttaattggacttttggtcccttaagtaatttgttgttttcattttggtcccataacttgtaaaatcaacgttttagtccctcttgttttgcttcg 35348892  T
Q  297 tcagtcaa 304  Q
    ||||||||    
T  35348893 tcagtcaa 35348900  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 39056422 - 39056517
Alignment:
Q  199 tggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    ||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||| |||||||    
T  39056422 tggcttaattggacttttggtcccttaagtaatttgttgttttcattttggtctcataatttgtaaaatcaacgttttagtccctcttgttttgct 39056517  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 36846656 - 36846583
Alignment:
Q  220 ccctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||  ||||||||| |||||||    
T  36846656 ccctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgct 36846583  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 35350226 - 35350151
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    |||||||||| | |||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |||||||    
T  35350226 ggcttaattggacttttggtcccctaagtaatttgttgttttcattttgatctcataactcgtaaaattaacgttt 35350151  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 26631337 - 26631243
Alignment:
Q  200 ggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    |||||||||| | ||||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||| |||  || |||||| |||||||    
T  26631337 ggcttaattggacttttggtcccccaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgct 26631243  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 26629784 - 26629873
Alignment:
Q  195 tttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctc 283  Q
    ||||||||||||||| | |||||||||| ||||||| |||||||||| ||||||||| |||||||| |||||||||| |||  |||||||    
T  26629784 tttttggcttaattggacttttggtcccttaagtaaattgttgttttcattttggtcccataactcataaaatcaacattttggtccctc 26629873  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 1519799 - 1519880
Alignment:
Q  190 ataagtttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaac 270  Q
    |||| ||||||||||||||| | |||||||||| ||| |||||||| ||||| ||||||||| ||||| |||||||||||||    
T  1519799 ataattttttggcttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaac 1519880  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 26491438 - 26491509
Alignment:
Q  222 ctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    |||||||||||   ||||  ||||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  26491438 ctaagtaattttcagtttatattttggtctcataactcgtaaaatcaacattttggtccctcttattttgct 26491509  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 39057885 - 39057810
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    |||||||||| | |||||||||| |||||||||||||||||| ||||| |||  |||||||||||||| |||||||    
T  39057885 ggcttaattggacttttggtcccctaagtaatttgttgtttttatttttgtcctataactcgtaaaattaacgttt 39057810  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 1521312 - 1521228
Alignment:
Q  200 ggcttaattgaatttttggtcc-ctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctc 283  Q
    |||||||||| | ||||||||| |||| |||||||||||||| |||||| || ||||| ||||||||||||| |||  |||||||    
T  1521312 ggcttaattggacttttggtcctctaactaatttgttgttttcattttgatcccataattcgtaaaatcaacattttggtccctc 1521228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 37106347 - 37106263
Alignment:
Q  220 ccctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtcagtcaa 304  Q
    |||||| |||||||||||||| ||||||||| ||||| |  ||||||||||| ||  |||||| |  |||||||  |||||||||    
T  37106347 ccctaactaatttgttgtttttattttggtcccataagttctaaaatcaacgatttggtccctttgcttttgctccgtcagtcaa 37106263  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 10735761 - 10735873
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtc 298  Q
    |||||||||| | |||||||||| |||||||||  ||||||| ||||||||| |||||||||||||||||||||||  ||||||||| |||||||  ||     
T  10735761 ggcttaattggacttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgtt 10735860  T
Q  299 agtcaaaaaggtc 311  Q
    |||||||||||||    
T  10735861 agtcaaaaaggtc 10735873  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 35047415 - 35047539
Alignment:
Q  198 ttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttg 296  Q
    |||||||||||| ||||||| |||| ||||| ||||  |||||| ||||||||| ||||||||||||||||||||||  ||||||| || |||||||  |    
T  35047415 ttggcttaattggatttttgatcccctaagttatttcgtgttttcattttggtcccataactcgtaaaatcaacgttcaagtcccttttgttttgctccg 35047514  T
Q  297 tcagtcaaaaaggtcacatccattag 322  Q
    | ||||||||||||| ||||||||||    
T  35047515 ttagtcaaaaaggtc-catccattag 35047539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 41144641 - 41144524
Alignment:
Q  195 tttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    ||||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||| ||||| |  ||||||||||||||  |||||| | ||||||||    
T  41144641 tttttggcttaattggatttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgct 41144542  T
Q  294 ttgtcagtcaaaaaggtc 311  Q
      || |||||||||||||    
T  41144541 ccgttagtcaaaaaggtc 41144524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 10737061 - 10736962
Alignment:
Q  195 tttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    ||||||| ||||||| | |||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||| |||  ||||||||| |||||||    
T  10737061 tttttggtttaattggacttttggtcccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgct 10736962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 1104086 - 1103995
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttatttt 290  Q
    |||||||||| | |||||||||| ||||||||||||||||   ||||| ||| ||||||||||||||||||| ||||||| |||||| ||||    
T  1104086 ggcttaattggacttttggtcccctaagtaatttgttgttaacattttagtcccataactcgtaaaatcaacatttcagttcctcttgtttt 1103995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 28702567 - 28702642
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    |||||||||| | |||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  28702567 ggcttaattggactttttgtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttt 28702642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 35081555 - 35081480
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    |||||||||| | |||||||||| |||||||||  ||||||| ||||||||| |||||||||||||||||||||||    
T  35081555 ggcttaattggacttttggtcccctaagtaattgtttgttttcattttggtcccataactcgtaaaatcaacgttt 35081480  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 4127348 - 4127296
Alignment:
Q  222 ctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  4127348 ctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttt 4127296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 11797608 - 11797539
Alignment:
Q  242 attttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtcagtcaaaaaggtc 311  Q
    ||||||||||||||||||||||||||||| |||  ||||||||| |||| ||  || |||||||||||||    
T  11797608 attttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccgttagtcaaaaaggtc 11797539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 1102616 - 1102700
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctc 283  Q
    |||||||||| | |||||||||| ||| |||||||||||||  || |||||| ||||||||||||||||||| |||  |||||||    
T  1102616 ggcttaattggacttttggtcccataactaatttgttgtttacatattggtcccataactcgtaaaatcaacatttaggtccctc 1102700  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 41143261 - 41143343
Alignment:
Q  222 ctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtcagtcaa 304  Q
    |||| |||||||||||||| ||||||||||||||| |  |||||||||| |||  |||||| |  ||||||| ||||||||||    
T  41143261 ctaactaatttgttgtttttattttggtctcataagttctaaaatcaacattttggtccctttgtttttgctctgtcagtcaa 41143343  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 4124753 - 4124849
Alignment:
Q  199 tggcttaattgaatttttggtcc-ctaagtaa-tttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    ||||||||||| | ||||||||| |||||||| ||| ||||||| ||||||||  ||||| || ||||||||||||||  |||||| || |||||||    
T  4124753 tggcttaattggacttttggtcctctaagtaaatttcttgttttcattttggttccataattcataaaatcaacgttttggtcccttttgttttgct 4124849  T

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Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 196 - 304
Target Start/End: Original strand, 28291289 - 28291398
Alignment:
Q  196 ttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctt 294  Q
    |||||||||||||| |||||||||||| |||||||||    ||||| ||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||    
T  28291289 ttttggcttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgctt 28291388  T
Q  295 tgtcagtcaa 304  Q
     || ||||||    
T  28291389 cgttagtcaa 28291398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 200 - 304
Target Start/End: Complemental strand, 43203398 - 43203293
Alignment:
Q  200 ggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtc 298  Q
    |||||||||| | ||||||||| | || ||||||||| |||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||  |||    
T  43203398 ggcttaattggacttttggtccattaaataatttgttattttcattttggtcccataactcgtaaaatcaacatttccgtccctcttattttgctccgtc 43203299  T
Q  299 agtcaa 304  Q
    ||||||    
T  43203298 agtcaa 43203293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 13363195 - 13363253
Alignment:
Q  404 ttcttaaagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13363195 ttcttgaacaatgaatgaataagaatgagaattaagatgatgattttaggttgttgttg 13363253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 31845917 - 31845828
Alignment:
Q  195 tttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctc 283  Q
    ||||||||||||||| | |||||||||| ||||||| |||||||||| ||||||||| |||||||| |||||||||| |||  |||||||    
T  31845917 tttttggcttaattggagttttggtcccttaagtaaattgttgttttcattttggtcccataactcataaaatcaacattttggtccctc 31845828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 31844365 - 31844460
Alignment:
Q  199 tggcttaattgaatttttggtccctaa-gtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    ||||||||||| | ||||||||||||| ||||||||||||||| ||||| ||| | ||||||||||||| ||| |||  ||||||||| |||||||    
T  31844365 tggcttaattggacttttggtccctaaagtaatttgttgttttcattttagtcccgtaactcgtaaaattaacattttggtccctcttgttttgct 31844460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 43202115 - 43202178
Alignment:
Q  220 ccctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctc 283  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||  |||||||    
T  43202115 ccctaagtaatttgttgttttcattttagtcccataactcgtaaaatcaacattttggtccctc 43202178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 24306223 - 24306173
Alignment:
Q  219 tccctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaa 269  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  24306223 tccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaa 24306173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 24853444 - 24853385
Alignment:
Q  200 ggcttaattgaatttttggtccctaagtaatttgttgttttaattttggtctcataactc 259  Q
    ||||||||||||| |||||||||||| | |||||||||||| | ||||||| ||||||||    
T  24853444 ggcttaattgaatctttggtccctaacttatttgttgttttcaatttggtcccataactc 24853385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 29738824 - 29738772
Alignment:
Q  410 aagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    |||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||    
T  29738824 aagaatgaatgagtaagcatgagaattaacatgatgattctaggttgttgttg 29738772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 29738904 - 29738852
Alignment:
Q  410 aagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    |||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||    
T  29738904 aagaatgaatgagtaagcatgagaattaacatgatgattctaggttgttgttg 29738852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 38697866 - 38697974
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtc 298  Q
    |||||||||||  |||||||||| ||||||||||  | |||  ||||||||  ||||||| ||||||||||| |||  ||||||||| |||||||  ||     
T  38697866 ggcttaattgatcttttggtcccctaagtaattttctatttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgtt 38697965  T
Q  299 agtcaaaaa 307  Q
    |||||||||    
T  38697966 agtcaaaaa 38697974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 3138976 - 3138918
Alignment:
Q  202 cttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactc 259  Q
    ||||||||||  |||||||||| || | |||||||||||| ||||||||||||||||||    
T  3138976 cttaattgaacctttggtccctcaacttatttgttgttttcattttggtctcataactc 3138918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 28291485 - 28291397
Alignment:
Q  198 ttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctctt 285  Q
    |||||||||||| |||||| ||||| ||| |||||    ||||| | ||||||| ||||||||||||||| ||| |||| |||||||||    
T  28291485 ttggcttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccctctt 28291397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 5382 - 5248
Alignment:
Q  71 caagcaggtcaagcaatgggtcggggaaacggatttttgtatggtttaagctttttatttaaaaaagaaagta---gttgacacgtgtcaagaactgaac 167  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||| ||||| | |||||||||||| |    |  ||||||||||||| ||||||    
T  5382 caagcaggtcaagcaatgggtcggggagacgggtttttgtatgatttaagttttttctgtaaaaaagaaagaaaatttaaacacgtgtcaagagctgaac 5283  T
Q  168 tgttcgattcatctaagggttcataagtttttggc 202  Q
     | | ||||||||||| ||||||| ||| ||||||    
T  5282 cgcttgattcatctaacggttcattagtctttggc 5248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 11968594 - 11968490
Alignment:
Q  201 gcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtca 299  Q
    ||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||  ||||||| |||||||  |||||| || ||||||||||| |    
T  11968594 gcttaattggatttttggtcccctaactaatttgttgttttcattttggtctcataacctgtaaaattaacgttttggtcccttttgttttgctttgtta 11968495  T
Q  300 gtcaa 304  Q
    |||||    
T  11968494 gtcaa 11968490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 462
Target Start/End: Original strand, 13504323 - 13504368
Alignment:
Q  417 aatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  13504323 aatgaataagaatgagaattaagatgatgattataggttgttgttg 13504368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 11967241 - 11967321
Alignment:
Q  195 tttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    ||||||| ||||||| | |||||||||| ||| |||||||||||||| |||||||| ||||||||| ||||||||| ||||    
T  11967241 tttttggtttaattgtacttttggtcccctaattaatttgttgttttcattttggtttcataactcataaaatcaatgttt 11967321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 30233029 - 30232941
Alignment:
Q  195 tttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccct 282  Q
    |||| |||||||||| | |||||||||| ||| || ||||||||||| ||||||||| |||||||  ||||||||||||||| ||||||    
T  30233029 ttttaggcttaattggacttttggtcccctaactagtttgttgttttcattttggtcccataacttctaaaatcaacgtttcggtccct 30232941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 30231476 - 30231551
Alignment:
Q  200 ggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    |||||||||| | ||||||||||| || |||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  30231476 ggcttaattggacttttggtcccttaactaatttgttgttttcattttggtcccataacttctaaaatcaacgttt 30231551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 138327 - 138241
Alignment:
Q  197 tttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccct 282  Q
    ||||||||||||  | |||||||||| ||| ||||||| |||||| ||||||||| |||||||  ||||||||||||||| ||||||    
T  138327 tttggcttaatttgacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgtttcggtccct 138241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 146348 - 146262
Alignment:
Q  197 tttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccct 282  Q
    ||||||||||||  | |||||||||| ||| ||||||| |||||| ||||||||| |||||||  ||||||||||||||| ||||||    
T  146348 tttggcttaatttgacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgtttcggtccct 146262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 35037131 - 35037206
Alignment:
Q  200 ggcttaattgaatttttggtcc-ctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    ||||||||||  |||||||||| |||| ||||||   ||||| |||||||||||||||||| ||||||||||||||    
T  35037131 ggcttaattggttttttggtcctctaattaattttcagttttcattttggtctcataactcataaaatcaacgttt 35037206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 7312400 - 7312340
Alignment:
Q  200 ggcttaattgaatttttggtcc-ctaagtaatttgttgttttaattttggtctcataactc 259  Q
    ||||||||||||| |||||||  |||| | |||||||||||| ||||||||||||||||||    
T  7312400 ggcttaattgaatatttggtcttctaacttatttgttgtttttattttggtctcataactc 7312340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 136625 - 136700
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    |||||||||| | |||| ||||| ||| |||||||||||||| ||||| ||| |||||||  ||||||||||||||    
T  136625 ggcttaattggacttttcgtcccctaactaatttgttgtttttattttagtcccataacttttaaaatcaacgttt 136700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 12665789 - 12665901
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtc 298  Q
    |||||||||  |||||||||||| |||||||||    ||||| ||||||||| ||||| ||||||||||||| |||| |||||||||||||||||| ||     
T  12665789 ggcttaatttgatttttggtcccctaagtaattatcagtttttattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgtt 12665888  T
Q  299 agtcaaaaaggtc 311  Q
    |||||||||||||    
T  12665889 agtcaaaaaggtc 12665901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 48529015 - 48528924
Alignment:
Q  200 ggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttatttt 290  Q
    |||||||||| | ||||||||||  ||||||||||||||||  ||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  48529015 ggcttaattggacttttggtcccccaagtaatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttt 48528924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 404 - 462
Target Start/End: Complemental strand, 27689786 - 27689728
Alignment:
Q  404 ttcttaaagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27689786 ttcttgaagaataaatgaataagaatgagaattaagatgatgattctaggttgttgttg 27689728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 30551206 - 30551264
Alignment:
Q  404 ttcttaaagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  30551206 ttcttgaagaatgaatgaataagaatgagaattaagatgattattttaggttgttgttg 30551264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 308
Target Start/End: Complemental strand, 7306376 - 7306264
Alignment:
Q  197 tttggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgcttt 295  Q
    ||||| ||||||| | ||||||| ||| ||||||||||||||||| |||||||||  |||||||||||||| ||| |||  ||||||||| |||| || |    
T  7306376 tttggtttaattggacttttggttccttaagtaatttgttgttttcattttggtcctataactcgtaaaattaacattttggtccctcttgttttcctct 7306277  T
Q  296 gtcagtcaaaaag 308  Q
    || ||||||||||    
T  7306276 gttagtcaaaaag 7306264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 48527532 - 48527599
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaat 266  Q
    |||||||||| |||||||||||| |||||||||||||||||  ||||||||| |||||||||||||||    
T  48527532 ggcttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaat 48527599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 22766453 - 22766511
Alignment:
Q  404 ttcttaaagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||    
T  22766453 ttcttgaagaatgaataaataagaatgagaattaagatgatgattctaggttgttgttg 22766511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 37624187 - 37624245
Alignment:
Q  404 ttcttaaagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    ||||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  37624187 ttcttgaaaaatgaatgaataagaatgagaattaagatgataattttaggttgttgttg 37624245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 462
Target Start/End: Original strand, 23081770 - 23081815
Alignment:
Q  417 aatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  23081770 aatgaataagaatgagaattaagatgatgattctaggttgttgttg 23081815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 26287902 - 26287818
Alignment:
Q  200 ggcttaattgaatttttggtcc-ctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctc 283  Q
    |||||||||| | ||||||||| |||| |||||||||||||| ||||||||| ||||| ||||||||||||| |||  |||||||    
T  26287902 ggcttaattggacttttggtcctctaactaatttgttgttttcattttggtcccataattcgtaaaatcaacattttggtccctc 26287818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 7304807 - 7304905
Alignment:
Q  197 tttggcttaattgaatttttggt-ccctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctt 294  Q
    ||||||||||||| | | ||||| ||| || |||||||||||||| ||| || || ||||||||||||||||||  |||  ||||||||||||||||||    
T  7304807 tttggcttaattggactcttggttcccgaaataatttgttgttttcattgtgatcccataactcgtaaaatcaatattttggtccctcttattttgctt 7304905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 26286408 - 26286481
Alignment:
Q  198 ttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaac 270  Q
    |||||||||||| | |||||||||| ||| |||||||| ||||| ||||||||| ||||| |||||||||||||    
T  26286408 ttggcttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaac 26286481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 5611719 - 5611795
Alignment:
Q  195 tttttggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaac 270  Q
    ||||||||||||||| | ||||||||| | || |||||||||||||| ||||||||| ||||| | |||||||||||    
T  5611719 tttttggcttaattggacttttggtcctttaactaatttgttgttttcattttggtcccataatttgtaaaatcaac 5611795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 5613203 - 5613132
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaac 270  Q
    |||||||||| | ||||| |||| ||| |||||||| ||||| ||||||||| ||||| |||||||||||||    
T  5613203 ggcttaattggacttttgatcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaac 5613132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 18821820 - 18821773
Alignment:
Q  236 gttttaattttggtctcataactcgtaaaatcaacgtttcagtccctc 283  Q
    ||||| |||||| ||||| ||||||||||||||||||||| |||||||    
T  18821820 gttttcattttgatctcacaactcgtaaaatcaacgtttcggtccctc 18821773  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 293
Target Start/End: Complemental strand, 43442878 - 43442787
Alignment:
Q  203 ttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    ||||||||| |||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||| |||  ||||||||| |||||||    
T  43442878 ttaattgaacttttggtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgct 43442787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 669506 - 669394
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtc 298  Q
    |||||||||| |||||||||||| |||||||||    ||||| ||||||||| ||||| ||||||||||||| |||| |||||| ||||||||||| ||     
T  669506 ggcttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtcccttttattttgcttcgtt 669407  T
Q  299 agtcaaaaaggtc 311  Q
     ||||||||||||    
T  669406 tgtcaaaaaggtc 669394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 10955843 - 10955937
Alignment:
Q  200 ggcttaattgaatttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    |||||||||| | ||||||||||| ||||||||||||||||| |||||| |  |||||||  |||||||||||||| |||||||||| |||||||    
T  10955843 ggcttaattggacttttggtcccttaagtaatttgttgttttcattttgattccataacttataaaatcaacgttttagtccctcttgttttgct 10955937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 10957271 - 10957197
Alignment:
Q  201 gcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  10957271 gcttaattggacttttggtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttt 10957197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 43441345 - 43441411
Alignment:
Q  201 gcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaat 266  Q
    ||||| ||| |||||||||||| ||||||| |||||||||| |||||||||||||||||| ||||||    
T  43441345 gcttagttggatttttggtcccctaagtaaattgttgttttcattttggtctcataactcataaaat 43441411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 26135639 - 26135714
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    |||||||||| | |||||||||| ||| ||||||| |||||| ||||||||| |||||||  ||||||||||||||    
T  26135639 ggcttaattggacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgttt 26135714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 35295740 - 35295791
Alignment:
Q  242 attttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgct 293  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||| |||||||    
T  35295740 attttggtcccataactcgtaaagtcaacgttttagtccctcttgttttgct 35295791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 26146827 - 26146742
Alignment:
Q  198 ttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccct 282  Q
    |||||||||||| | |||||||||| ||| |||||||||||||| |||||| ||  |||| |  ||||||||| ||||| ||||||    
T  26146827 ttggcttaattggacttttggtcccctaactaatttgttgttttcattttgatcctataaattttaaaatcaatgtttcggtccct 26146742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 37415006 - 37415105
Alignment:
Q  213 ttttggtccct-aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtcagtcaaaaaggtc 311  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||  || |||||| |||||||  || |||||||||||||    
T  37415006 ttttggtcccttaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgttagtcaaaaaggtc 37415105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 197 - 308
Target Start/End: Complemental strand, 37416559 - 37416447
Alignment:
Q  197 tttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgcttt 295  Q
    |||||||||||||   |||||||||| |||||||||||||||||| ||||||||  |||||||| |||||||||| |||  ||||||||| |||||||      
T  37416559 tttggcttaattggccttttggtcccctaagtaatttgttgttttcattttggttccataactcataaaatcaacattttggtccctcttgttttgctcc 37416460  T
Q  296 gtcagtcaaaaag 308  Q
    || ||||||||||    
T  37416459 gttagtcaaaaag 37416447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 34902608 - 34902660
Alignment:
Q  410 aagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||||||||    
T  34902608 aagaatgaataaataagaatgagaattaatatgatgattttaggttgttgttg 34902660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 14745272 - 14745210
Alignment:
Q  245 ttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtcagtcaaaaa 307  Q
    |||||| ||||||||||||| |||||||||  ||||||||| |||||||  || |||||||||    
T  14745272 ttggtcccataactcgtaaagtcaacgttttggtccctcttgttttgctcagttagtcaaaaa 14745210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 1309396 - 1309505
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtc 298  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||| |||  |||||||||||||| ||| |||  ||||||||| ||||  |||||     
T  1309396 ggcttaattggatttttggtcccctaagtaatttgttgttttcattttagtcatataactcgtaaaattaacattttggtccctcttgttttcttttgtt 1309495  T
Q  299 agtcaaaaag 308  Q
    ||||||||||    
T  1309496 agtcaaaaag 1309505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 41296062 - 41296120
Alignment:
Q  404 ttcttaaagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  41296062 ttcttgaagaatgaatgaataagaatgagaattaagatgatgattttaggtggttgttg 41296120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 1147742 - 1147830
Alignment:
Q  195 tttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccct 282  Q
    |||| |||||||||| | |||||||||| ||| |||||||||||||| ||||| ||| |||||||  ||||||||||||||| ||||||    
T  1147742 ttttcggcttaattggacttttggtcccctaactaatttgttgttttcattttagtcccataacttctaaaatcaacgtttcggtccct 1147830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 1310761 - 1310677
Alignment:
Q  224 aagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtcagtcaaaaag 308  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||| |||  ||||||||  ||||| || || ||||||||||    
T  1310761 aagtaatttgttgttttcattttaatctcataactcgtaaaatcaacattttggtccctctcgttttgtttcgttagtcaaaaag 1310677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 10367791 - 10367739
Alignment:
Q  410 aagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||||||||    
T  10367791 aagaatgaatgagtaagaatgagaattaacatgatgattttaggttgttgttg 10367739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 1149306 - 1149231
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgttt 274  Q
    |||||||||| | |||||||||| ||| |||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  1149306 ggcttaattggacttttggtcccctaactaatttgttgttttcattttggtcccataacttctaaaatcaacgttt 1149231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 43789964 - 43790022
Alignment:
Q  404 ttcttaaagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    |||||||| ||| ||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  43789964 ttcttaaaaaatgaatgaataaaaatgaaaatgaagatgatgattttaggttgttgttg 43790022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 40556936 - 40557010
Alignment:
Q  198 ttggcttaattgaatttttggtcc-ctaagtaatttgttgttttaattttggtctcataactcgtaaaatcaacg 271  Q
    |||||||||||  || |||||||| |||| |||||||||||||| ||||||||||||||| |  |||||||||||    
T  40556936 ttggcttaatttgatatttggtcctctaattaatttgttgttttcattttggtctcataagttctaaaatcaacg 40557010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 12959263 - 12959315
Alignment:
Q  410 aagaataaatgaataagaatgagaattaagatgatgattttaggttgttgttg 462  Q
    |||||| ||||| | |||||||||||||| ||||||||| |||||||||||||    
T  12959263 aagaatgaatgagtcagaatgagaattaacatgatgattctaggttgttgttg 12959315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 37868605 - 37868679
Alignment:
Q  410 aagaataaatgaataagaatgagaattaagatgatgattttaggttg---ttgttgaggaaaaattagtcttgat 481  Q
    |||||| ||||| |||||||||||||||| ||||||| | |||||||   ||||||||||| ||| |||||||||    
T  37868605 aagaatgaatgagtaagaatgagaattaacatgatgactctaggttgtttttgttgaggaacaatgagtcttgat 37868679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 25559279 - 25559385
Alignment:
Q  199 tggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgt 297  Q
    ||||||||||  || ||||||||| ||| |||||||||||||| ||||||||| ||||| |  ||||||||||| ||  |||||| |  |||||||  ||    
T  25559279 tggcttaattcgatatttggtcccctaactaatttgttgtttttattttggtcccataagttctaaaatcaacgatttggtccctttgcttttgctccgt 25559378  T
Q  298 cagtcaa 304  Q
    |||||||    
T  25559379 cagtcaa 25559385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 12095269 - 12095334
Alignment:
Q  195 tttttggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactc 259  Q
    |||||| ||||||||| | ||||||||| ||| | |||| ||||||| ||||||||||||||||||    
T  12095269 tttttgacttaattgactatttggtcccctaacttatttattgttttcattttggtctcataactc 12095334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 39825 - 39935
Alignment:
Q  203 ttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctcttattttgctttgtcagt 301  Q
    ||||||| | |||||||||| |||||||||| || |||| ||||||||| ||||||| |||||||||||||| ||||| ||| | |||||||  | ||||    
T  39825 ttaattggacttttggtcccctaagtaatttattattttcattttggtcccataacttgtaaaatcaacgttccagtctctcctgttttgctccgccagt 39924  T
Q  302 caaaaaggtca 312  Q
    |||| ||||||    
T  39925 caaataggtca 39935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 8308 - 8223
Alignment:
Q  200 ggcttaattgaatttttggtccc-taagtaatttgttgttttaattttggtctcataactcgtaaaatcaacgtttcagtccctct 284  Q
    |||||||||||| |||||||||| |||||||||  ||||||  ||||||||| ||||||||||||||||||| |||  ||||||||    
T  8308 ggcttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccctct 8223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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