View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16176_low_20 (Length: 228)
Name: NF16176_low_20
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16176_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 35744290 - 35744487
Alignment:
| Q |
16 |
agaagacaataattaaaaagttaggaatacacttacgtttcagttttgagagggaatgccaaaatgttacaaacccattactattctaatgttgtagggt |
115 |
Q |
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| T |
35744290 |
agaagacaataattaaaaagttaggaatacacttacgtttcagttttgagagggaatgccaaaatgttacaaacccattactattctaatgctgtagggt |
35744389 |
T |
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| Q |
116 |
ttcttgatgatattagtggattgactcgattcaacaatgaaggtttgtccccacaattttaatagaagattctttaagaaaaaattaagggaaaaatt |
213 |
Q |
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| T |
35744390 |
ttcttgatgatattagtggattgactcgattcaacaatgaaggtttgtccccacaattttaatagaagattctttaagaaaaaattaagggaaaaatt |
35744487 |
T |
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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 45512819 - 45513012
Alignment:
| Q |
16 |
agaagacaataattaaaaagttaggaatacacttacgtttcagttttgagagggaatgccaaaatgttacaaacccattactattctaatgttgtagggt |
115 |
Q |
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||||||||| ||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |
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| T |
45512819 |
agaagacaaggatttaaaaattaggaatacacctatgtttcagttttgagagggaatgccaaaatgttacaaacccattactattataat-ctgtaaggt |
45512917 |
T |
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| Q |
116 |
ttc------------ttgatgatattagtggattgac-tcgattcaacaatgaaggtttgtccccaca--attttaatagaagattctttaagaa |
195 |
Q |
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| T |
45512918 |
ttcttaaatgtttggttgatgatattaatggattgacttagattcaacaatgaaggtttgtccccacaatatgttaacagaagattctttaagaa |
45513012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 26126688 - 26126739
Alignment:
| Q |
39 |
ggaatacacttacgtttcagttttgagagggaatgccaaaatgttacaaacc |
90 |
Q |
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|||||| ||||| ||||||||||||||||| || ||||||| |||||||||| |
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| T |
26126688 |
ggaatatacttatgtttcagttttgagaggaaacgccaaaaggttacaaacc |
26126739 |
T |
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