View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16176_low_3 (Length: 472)

Name: NF16176_low_3
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16176_low_3
NF16176_low_3
[»] chr6 (6 HSPs)
chr6 (124-336)||(15101851-15102064)
chr6 (331-453)||(15100978-15101099)
chr6 (11-76)||(15102208-15102273)
chr6 (11-69)||(32362672-32362730)
chr6 (11-70)||(17720430-17720489)
chr6 (359-449)||(3121020-3121109)
[»] chr8 (3 HSPs)
chr8 (11-69)||(29722371-29722429)
chr8 (12-58)||(13638290-13638336)
chr8 (12-58)||(13738703-13738749)
[»] chr7 (3 HSPs)
chr7 (11-69)||(14746758-14746816)
chr7 (11-69)||(38076860-38076918)
chr7 (359-421)||(18730663-18730725)
[»] chr4 (1 HSPs)
chr4 (11-69)||(28732346-28732404)
[»] chr3 (5 HSPs)
chr3 (11-69)||(52195085-52195143)
chr3 (20-69)||(53272696-53272745)
chr3 (11-69)||(38356167-38356225)
chr3 (375-453)||(20098101-20098179)
chr3 (11-67)||(1660536-1660592)
[»] chr2 (2 HSPs)
chr2 (11-69)||(856240-856298)
chr2 (11-69)||(3704333-3704391)
[»] chr5 (1 HSPs)
chr5 (361-405)||(19049911-19049955)
[»] chr1 (1 HSPs)
chr1 (359-447)||(5505404-5505492)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 124 - 336
Target Start/End: Complemental strand, 15102064 - 15101851
Alignment:
Q  124 acaagaattggagaagtcattggtaaggggtatttcatattctgatctattttatataagaggtgtttcatat-ctgatcttttaggatgttgttttcga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  15102064 acaagaattggagaagtcattggtaaggggtatttcatattctgatctattttatataagaggtgttttatattctgatcttttaggatgttgttttcga 15101965  T
Q  223 tgaactgagaaataaataccttttcaaataaatagattaaagaaatttaacctttctttatcaacttctttcttcttcctcttcaaatattcttgtgtac 322  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15101964 tgaactgagaaataaatactttttcaaataaatagattaaagaaatttaacctttctttatcaacttctttcttcttcctcttcaaatattcttttgtac 15101865  T
Q  323 tatgttgttatcat 336  Q
    | || |||||||||    
T  15101864 tctgctgttatcat 15101851  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 331 - 453
Target Start/End: Complemental strand, 15101099 - 15100978
Alignment:
Q  331 tatcatgatttatttctggaccgttaatatatattcataaggacctaaaagaccttcaaaatggtttttagaccattttaaaggacttagcgtcttccag 430  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||  |  |||||||| | ||| ||||||||||| | || ||    
T  15101099 tatcatgatttatttctggaccgtcaatatatatttataaggacctaaaagacctccaaaa-agactttagaccctcttagaggacttagcgccctctag 15101001  T
Q  431 aaaggccctaaggcccaagacgc 453  Q
    ||||| || ||||||||||||||    
T  15101000 aaaggacccaaggcccaagacgc 15100978  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 15102273 - 15102208
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttcattacaac 76  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  15102273 taacgggtccgaccaccatctactcgtgccataaataaagttggcattgttagctttcattacaac 15102208  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 32362672 - 32362730
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  32362672 taacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttca 32362730  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 17720430 - 17720489
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttcat 70  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  17720430 taacgggtccgaccaccatctactcgtgccataaacaaagttggcatggttagctttcat 17720489  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 449
Target Start/End: Original strand, 3121020 - 3121109
Alignment:
Q  359 atatattcataaggacctaaaagaccttcaaaatggtttttagaccattttaaaggacttagcgtcttccagaaaggccctaaggcccaag 449  Q
    ||||||||||||||||||||||||||| ||||| |  ||||| ||| | | | ||||||||||| | || |||| |||| |||||||||||    
T  3121020 atatattcataaggacctaaaagacctccaaaaggaattttaaaccctctcagaggacttagcg-cctcgagaagggccataaggcccaag 3121109  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 29722429 - 29722371
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  29722429 taacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttca 29722371  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 13638290 - 13638336
Alignment:
Q  12 aacgggttcgaccaccatctactcgtgtcataaacaaagttggcatt 58  Q
    ||||||| ||||||||||||| ||||| |||||||||| ||||||||    
T  13638290 aacgggtccgaccaccatctaatcgtgccataaacaaacttggcatt 13638336  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 13738703 - 13738749
Alignment:
Q  12 aacgggttcgaccaccatctactcgtgtcataaacaaagttggcatt 58  Q
    ||||||| ||||||||||||| ||||| |||||||||| ||||||||    
T  13738703 aacgggtccgaccaccatctaatcgtgccataaacaaacttggcatt 13738749  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 14746758 - 14746816
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  14746758 taacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttca 14746816  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 38076918 - 38076860
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  38076918 taacggatccgaccaccatctactcgtgccataaacaaagttggcattgttagctttca 38076860  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 18730663 - 18730725
Alignment:
Q  359 atatattcataaggacctaaaagaccttcaaaatggtttttagaccattttaaaggacttagc 421  Q
    |||||||| || |||||||| |||||||||||| |||| ||||||| | |||||||| |||||    
T  18730663 atatattcctatggacctaagagaccttcaaaaaggttcttagaccctcttaaaggatttagc 18730725  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 28732404 - 28732346
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  28732404 taacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttca 28732346  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 52195143 - 52195085
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  52195143 taacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttca 52195085  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 53272745 - 53272696
Alignment:
Q  20 cgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  53272745 cgaccaccatctactcgtgccataaacaaagttggcattgttagctttca 53272696  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 38356225 - 38356167
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    |||| ||| ||||||||| ||| ||||| ||||||||||||||||||| ||||||||||    
T  38356225 taacaggtccgaccaccacctattcgtgccataaacaaagttggcattgttagctttca 38356167  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 20098179 - 20098101
Alignment:
Q  375 ctaaaagaccttcaaaatggtttttagaccattttaaaggacttagcgtcttccagaaaggccctaaggcccaagacgc 453  Q
    ||||||||||| ||||| || ||||||||| |   ||||||||||| | | |||| ||||||||||||||| |||||||    
T  20098179 ctaaaagacctccaaaagggcttttagaccctcccaaaggacttagtgccctccataaaggccctaaggcctaagacgc 20098101  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 1660592 - 1660536
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagcttt 67  Q
    |||||| || || ||||||||||||||| |||||| ||||||| |||| ||||||||    
T  1660592 taacggatttgatcaccatctactcgtgccataaataaagttgccattgttagcttt 1660536  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 856298 - 856240
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  856298 taacgagtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttca 856240  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 3704333 - 3704391
Alignment:
Q  11 taacgggttcgaccaccatctactcgtgtcataaacaaagttggcattattagctttca 69  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  3704333 taacgggtccgaccaccatctacccgtgccataaacaaagttggcattgttagctttca 3704391  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 19049955 - 19049911
Alignment:
Q  361 atattcataaggacctaaaagaccttcaaaatggtttttagacca 405  Q
    |||||| |||||||||||||||||| ||||| || ||||||||||    
T  19049955 atattcctaaggacctaaaagacctccaaaagggattttagacca 19049911  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 447
Target Start/End: Original strand, 5505404 - 5505492
Alignment:
Q  359 atatattcataaggacctaaaagaccttcaaaatggtttttagaccattttaaaggacttagcgtcttccagaaaggccctaaggccca 447  Q
    |||| ||| |||| ||||||||||||||||||| || ||||||||| |   | |||||||| |||| || | |||||| ||||||||||    
T  5505404 atatcttcctaagcacctaaaagaccttcaaaagggcttttagaccctccaagaggacttaccgtcctctataaaggctctaaggccca 5505492  T

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