View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16176_low_5 (Length: 450)
Name: NF16176_low_5
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16176_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 127 - 438
Target Start/End: Original strand, 36524555 - 36524866
Alignment:
| Q |
127 |
aatctaatccattgaaaaaatgtgaatctaatgtttagcaggagaatttgaaattttttgctttaattaatattcgtcatgcatgcctttgatattggtg |
226 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
36524555 |
aatccaatccattgaaaaaatgtgaatctaatgtttagctggagaatttgaaattttttgctttaattaatattcgtcatgtatgccttttatattggtg |
36524654 |
T |
|
| Q |
227 |
ttcaccttttagatatatgcatgactaatgttgtaaatctatgaaatatgggaagaagaaagagaagagaaataatacatacccatacatatatctgtcc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36524655 |
ttcaccttttagatatatgcatgactaatgttgtaaatctatgaaatatgggaagaagaaagagaagagaaataatacatacccatacatatatctgtcc |
36524754 |
T |
|
| Q |
327 |
ttctcaatctttttcctacaccagcgacaagcatgtaggaatccctctggcaatgctggtgatgtccttttggtcggagcgtctagggctggaaaaccca |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
36524755 |
ttctcaatctttttcctacaccagcgacaagcatgtaggaatccctctggcaatgctggtgatgtccttttggtcggagcgtctaaggctgggaaaccca |
36524854 |
T |
|
| Q |
427 |
gtgagaataatc |
438 |
Q |
| |
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|||||||||||| |
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| T |
36524855 |
gtgagaataatc |
36524866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 227 - 438
Target Start/End: Original strand, 1091973 - 1092184
Alignment:
| Q |
227 |
ttcaccttttagatatatgcatgactaatgttgtaaatctatgaaatatgggaagaagaaagagaagagaaataatacatacccatacatatatctgtcc |
326 |
Q |
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| T |
1091973 |
ttcaccttttagatatatgcatgactaattttgtaaatctataaaatgtgggaagaagaaagagaagagaagcaaaacatacccatacatatacatgtcc |
1092072 |
T |
|
| Q |
327 |
ttctcaatctttttcctacaccagcgacaagcatgtaggaatccctctggcaatgctggtgatgtccttttggtcggagcgtctagggctggaaaaccca |
426 |
Q |
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| T |
1092073 |
ttatcaatctttttcctacaccatcgacaagcatgtaggaatccctctggcaatgttggtgatgtccttttggtcggagcatcgaaggctggaaaaccca |
1092172 |
T |
|
| Q |
427 |
gtgagaataatc |
438 |
Q |
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|||||||||||| |
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| T |
1092173 |
gtgagaataatc |
1092184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 36524420 - 36524502
Alignment:
| Q |
1 |
aagaagtttataaacaccactcatcaatatgattgtatgtgtatctgtatataatcatggtgaagacaataattcatatataa |
83 |
Q |
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| T |
36524420 |
aagaagtttataaacaccactcatcaatatgattgtatgtgtatctgtatataatcatgttgaagacaataattcatatataa |
36524502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1091824 - 1091893
Alignment:
| Q |
1 |
aagaagtttataaacaccactcatcaatatgattgtatgtgtatctgtatataatcatggtgaagacaat |
70 |
Q |
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| T |
1091824 |
aagaagtttataaacaccactcatcaatatgattgtacgtgtatctctatataatcatgttgaagacaat |
1091893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 18010353 - 18010400
Alignment:
| Q |
227 |
ttcaccttttagatatatgcatgactaatgttgtaaatctatgaaata |
274 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18010353 |
ttcaccttttagatatatgcatgattaatgttgtaaatctatgaaata |
18010400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 371
Target Start/End: Complemental strand, 17923136 - 17923001
Alignment:
| Q |
227 |
ttcaccttttagatatatgcatgactaatgttgtaaatctatgaaatatgggaagaagaaagagaagagaaataatacatacccatacatatatctgtcc |
326 |
Q |
| |
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|||||||||||||||||||||| | || |||||||||||||||||||| | || |||| |||| |||||||||||||||||||| || || |
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| T |
17923136 |
ttcaccttttagatatatgcataataaacgttgtaaatctatgaaatatcgaaataaga---------gaaacaatacatacccatacatatacctctct |
17923046 |
T |
|
| Q |
327 |
ttctcaatctttttcctacaccagcgacaagcatgtaggaatccc |
371 |
Q |
| |
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| |||||||| ||| | ||||| || ||||| |||||||||||| |
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| T |
17923045 |
tcttcaatcttcttcttgcaccaccgtcaagcttgtaggaatccc |
17923001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 141 - 436
Target Start/End: Original strand, 18103102 - 18103409
Alignment:
| Q |
141 |
aaaaaatgtgaatctaatgtttagcaggagaatttgaaattttttgctttaattaatattcgtcatgcatgcctttgatattggtgttca---------- |
230 |
Q |
| |
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||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||| || || |||||||||||||||||||||| |
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| T |
18103102 |
aaaaaatataaatctaatgtttagttggagaatttgaaattttttgctctaattaatattcatcgtgtatgcctttgatattggtgttcagttttcactt |
18103201 |
T |
|
| Q |
231 |
--ccttttagatatatgcatgactaatgttgtaaatctatgaaatatgggaagaagaaagagaagagaaataatacatacccatacatatatctgtcctt |
328 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||| |
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| T |
18103202 |
caccttttggatatatgcatgactaatgttgtatatctatgaaatgtgggaagaagaaagagaagagaaacaatacatacccatacatatacgtatcctt |
18103301 |
T |
|
| Q |
329 |
ctcaatctttttcctacaccagcgacaagcatgtaggaatccctctggcaatgctggtgatgtccttttggtcggagcgtctagggctggaaaacccagt |
428 |
Q |
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||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||| |||||| ||||||| | |
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| T |
18103302 |
ctcaatctttttcttacaccatcgacaagcatgtaagaatccctttggcaatgctgatgatgtccttttggtcggagcatctaaggctggtaaacccaat |
18103401 |
T |
|
| Q |
429 |
gagaataa |
436 |
Q |
| |
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|||||||| |
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| T |
18103402 |
gagaataa |
18103409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 18096185 - 18096267
Alignment:
| Q |
1 |
aagaagtttataaacaccactcatcaatatgattgtatgtgtatctgtatataatcatggtgaagacaataattcatatataa |
83 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||| |||||||||| |||||||||||| |
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| T |
18096185 |
aagaagtttataaacaccactaatcaatatgattgtacgtgtatttgtatataaccatgttgaagacaattattcatatataa |
18096267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18100482 - 18100532
Alignment:
| Q |
1 |
aagaagtttataaacaccactcatcaatatgattgtatgtgtatctgtata |
51 |
Q |
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| T |
18100482 |
aagaagtttataaacaccactactcaatatgattgtacgtgtatctgtata |
18100532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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