View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_1 (Length: 676)

Name: NF16177_high_1
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_1
NF16177_high_1
[»] chr3 (1 HSPs)
chr3 (10-676)||(43483267-43483933)


Alignment Details
Target: chr3 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 10 - 676
Target Start/End: Complemental strand, 43483933 - 43483267
Alignment:
Q  10 agaagcaaaggagaacaaaaatcacttgtagaatgcgtttgttttgtgaagcaaccatcttaaaagttaaaagcaatttagacttgtgtagtatatgatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43483933 agaagcaaaggagaacaaaaatcacttgtagaatgcgtttgttttgtgaagcaaccatcttaaaagttaaaagcaatttagacttgtgtagtatatgatt 43483834  T
Q  110 tgctctttttctgaatataccatatggatatgttaatttaggtcctatatatagacacattttggcagtttctagctacctaagttaactgtcatgaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43483833 tgctctttttctgaatataccatatggatatgttaatttaggtcctatatatagacacattttggcagtttctagctacctaagttaactgtcatgaatt 43483734  T
Q  210 attgggtccgtatattaatagatcatggtggtaaattgtatatgaccctaatggtccatgcagggtcaacatcatttttgtctggtttgaaatcgattgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43483733 attgggtccgtatattaatagatcatggtggtaaattgtatatgaccctaatggtccatgcagggtcaacatcatttttgtctggtttgaaatcgattgc 43483634  T
Q  310 catttatatttttctgaaatgataatnnnnnnnttatatgatcgctatatatgaattaatgtcaacctataatgtatatatacgtgtatttgagccatct 409  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43483633 catttatatttttctgaaatgataataaaaaaattatatgatcgctatatatgaattaatgtcaacctataatgtatatatacgtgtatttgagccatct 43483534  T
Q  410 tagttttcctatcatcattatctgcttcctattaatctaatatattgatataatattgttccctaactgtttcatgcatattagttagtgataaagatgg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |    
T  43483533 tagttttcctatcatcattatctgcttcctattaatctaatatattgatataatattgttccctaactgttccatgcatattagttagtgataatgtttg 43483434  T
Q  510 tctctaaattcaccaaagactaaggattttgtcttctcaaacctgttcggtcactttacagaaactcatgtttaggactctgtttgtcttgtgattctat 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  43483433 tctctaaattcaccaaagactaaggattttgtcttctcaaacctgttcggtcacttgacagaaactcctgtttaggactctgtttgtcttatgattctat 43483334  T
Q  610 taattgaaaacataattaagccatgattgagatttcaagcaatgcatatttttggaaataagataat 676  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  43483333 taattgaaaaaataattaagccatgattgagatttcaagccatgcttatttttggaaatcagataat 43483267  T

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