View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_102 (Length: 244)
Name: NF16177_high_102
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_102 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 43757535 - 43757320
Alignment:
| Q |
16 |
atgcattcaagttttgtttgatttcactcactcaattggatcaatttaggagataaaacttaaagaaactcttagaaatattatgtgaataaaattttgt |
115 |
Q |
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| T |
43757535 |
atgcattcaagttttgtttgatttcactcactcaattggatcaatttaggagataaaacttaaagaaactcttagaaatattatgtgaataaaattttgt |
43757436 |
T |
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| Q |
116 |
tttgagattaaatgcacacttgcttactcaacaagttaattatacagacattgcatactgccattttgtaccacacttatacaagagatatttttgcaaa |
215 |
Q |
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| T |
43757435 |
tttgagattaaatgcacacttgcttactcaacaagttatttatacagacattgcatactgccattttgtaccacacttatacacgagatatttttgcaaa |
43757336 |
T |
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| Q |
216 |
tataaaatgaaaatat |
231 |
Q |
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|||||||||||||||| |
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| T |
43757335 |
tataaaatgaaaatat |
43757320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 27543722 - 27543812
Alignment:
| Q |
45 |
actcaattggatcaatttaggagataaaactta---aagaaactcttagaaatattatgtgaataaaattttgttttgagattaaatgcac |
132 |
Q |
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| T |
27543722 |
actcaattggatcaatttaggagataaagctaattgaataaactcttagaaagattatatgaagaaaattttgttttgaaattgaatgcac |
27543812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 8441463 - 8441502
Alignment:
| Q |
40 |
cactcactcaattggatcaatttaggagataaaacttaaa |
79 |
Q |
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| T |
8441463 |
cactcgctcaattggatcaatttaggagaaaaaacttaaa |
8441502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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