View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_106 (Length: 239)

Name: NF16177_high_106
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_106
NF16177_high_106
[»] chr1 (1 HSPs)
chr1 (1-221)||(37628607-37628827)
[»] chr4 (1 HSPs)
chr4 (1-47)||(12831621-12831667)
[»] chr7 (2 HSPs)
chr7 (1-39)||(3922233-3922271)
chr7 (2-39)||(14760838-14760875)
[»] chr5 (2 HSPs)
chr5 (1-40)||(2294178-2294217)
chr5 (2-38)||(17567654-17567690)
[»] chr6 (1 HSPs)
chr6 (1-47)||(25063396-25063442)
[»] chr2 (1 HSPs)
chr2 (1-46)||(17408855-17408900)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37628607 - 37628827
Alignment:
Q  1 caaaatcaccacatttcaagccttatcaaacatcaaattcaaggttacctaatccttcatcacatcagtacgcttttgggttacctaacccttttgtagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37628607 caaaatcaccacatttcaagccttatcaaacatcaaattcaaggttacctaatccttcatcacatcagtacgcttttgggttacctaacccttttgtagg 37628706  T
Q  101 catcaatgttgttacttcnnnnnnnnnnnnnnnnnnnnnnnnngataggtaataagattaagtgtaaacgcgtgtattttttgacttccatatattttgc 200  Q
    ||||||||||||||||||                         |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37628707 catcaatgttgttacttctttttcttttgttgttttttgtttggataggtaataaaattaagtgtaaacgcgtgtattttttgacttccatatattttgc 37628806  T
Q  201 tcaattgatttcaactaggag 221  Q
    |||||||||||||||||||||    
T  37628807 tcaattgatttcaactaggag 37628827  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12831667 - 12831621
Alignment:
Q  1 caaaatcaccacatttcaagccttatcaaacatcaaattcaaggtta 47  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  12831667 caaaatcaccacatttcaagccttatcaaacatcaaattgaaggtta 12831621  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3922271 - 3922233
Alignment:
Q  1 caaaatcaccacatttcaagccttatcaaacatcaaatt 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3922271 caaaatcaccacatttcaagccttatcaaacatcaaatt 3922233  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 14760838 - 14760875
Alignment:
Q  2 aaaatcaccacatttcaagccttatcaaacatcaaatt 39  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  14760838 aaaatcaccgcatttcaagccttatcaaacatcaaatt 14760875  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2294178 - 2294217
Alignment:
Q  1 caaaatcaccacatttcaagccttatcaaacatcaaattc 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  2294178 caaaatcaccgcatttcaagccttatcaaacatcaaattc 2294217  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 17567690 - 17567654
Alignment:
Q  2 aaaatcaccacatttcaagccttatcaaacatcaaat 38  Q
    ||||||||| |||||||||||||||||||||||||||    
T  17567690 aaaatcaccgcatttcaagccttatcaaacatcaaat 17567654  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25063442 - 25063396
Alignment:
Q  1 caaaatcaccacatttcaagccttatcaaacatcaaattcaaggtta 47  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||    
T  25063442 caaaatcatcgcatttcaagccttatcaaacatcaaattgaaggtta 25063396  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17408855 - 17408900
Alignment:
Q  1 caaaatcaccacatttcaagccttatcaaacatcaaattcaaggtt 46  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||    
T  17408855 caaaatcaccgcatttcaagccttatcaaacatccaattgaaggtt 17408900  T

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