View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_107 (Length: 237)
Name: NF16177_high_107
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_107 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 14670915 - 14671143
Alignment:
| Q |
2 |
ccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14670915 |
ccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaa |
14671014 |
T |
|
| Q |
102 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagt- |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14671015 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagtt |
14671114 |
T |
|
| Q |
201 |
------ttagtcctaaaatattcaggatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14671115 |
agaaacttagtcctaaaatattcaggatc |
14671143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 14705088 - 14704889
Alignment:
| Q |
2 |
ccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14705088 |
ccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaa |
14704989 |
T |
|
| Q |
102 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagtt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14704988 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccataagagaaaacatctgatttcttagtt |
14704889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 14685398 - 14685170
Alignment:
| Q |
2 |
ccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14685398 |
ccttgtttagagaatccatattcactttgccaatcaaaaatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacattgccaa |
14685299 |
T |
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| Q |
102 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagtt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14685298 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagtt |
14685199 |
T |
|
| Q |
202 |
-------tagtcctaaaatattcaggatc |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
14685198 |
agaaatgtagtcctaaaatattcaggatc |
14685170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 30730905 - 30730706
Alignment:
| Q |
2 |
ccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30730905 |
ccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccgcaatgccaa |
30730806 |
T |
|
| Q |
102 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagtt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30730805 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagtt |
30730706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 24059110 - 24058912
Alignment:
| Q |
2 |
ccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaa |
101 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||| ||| ||||||||||| |||||||| |
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| T |
24059110 |
ccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtgccctttttatggcagcttaatgcccaaaatgccaa |
24059011 |
T |
|
| Q |
102 |
attcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagt |
200 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |
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| T |
24059010 |
attcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagt |
24058912 |
T |
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