View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_11 (Length: 569)

Name: NF16177_high_11
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_11
NF16177_high_11
[»] chr1 (9 HSPs)
chr1 (210-527)||(41448507-41448835)
chr1 (21-189)||(41431799-41431967)
chr1 (29-188)||(41426407-41426566)
chr1 (38-189)||(41442406-41442557)
chr1 (81-189)||(41453664-41453772)
chr1 (16-121)||(41448905-41449011)
chr1 (83-157)||(52472991-52473066)
chr1 (372-471)||(41453377-41453476)
chr1 (82-115)||(7238212-7238245)
[»] chr2 (4 HSPs)
chr2 (21-186)||(33370088-33370255)
chr2 (29-184)||(33363748-33363903)
chr2 (34-188)||(5839239-5839393)
chr2 (374-485)||(33369792-33369903)
[»] scaffold0648 (1 HSPs)
scaffold0648 (29-189)||(5894-6054)
[»] scaffold0274 (1 HSPs)
scaffold0274 (29-189)||(17404-17564)
[»] chr7 (1 HSPs)
chr7 (29-189)||(7762943-7763103)
[»] chr8 (1 HSPs)
chr8 (36-182)||(21223819-21223965)
[»] chr4 (1 HSPs)
chr4 (35-156)||(1004661-1004782)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 210 - 527
Target Start/End: Complemental strand, 41448835 - 41448507
Alignment:
Q  210 tcaaagaaatggccagctggttgagcagtatgcagaagcagtttcacactacatagtgtgtataagttcttaactccaacatcaaaataaatatctggac 309  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41448835 tcaaagaaatggccggctggttgagcaatatgcagaagcagtttcacactacatagtgtgtataagttcttaactccaacatcaaaacaaatatctggac 41448736  T
Q  310 ataattgaaccaaagataaatttggcatctttcagtaagaa-gttataaagaaaataagccaa---------ttcgataaaacgtgaactagccctacca 399  Q
    ||||| ||||||||||||| ||||| ||| |||||||||||  ||||||||||||||||||||         || ||||||||||||||||| |||||||    
T  41448735 ataatagaaccaaagataattttgggatcgttcagtaagaatattataaagaaaataagccaatgtactccgttggataaaacgtgaactagacctacca 41448636  T
Q  400 attcagtagcaatgaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtccgtaagcttgaaaaa-catttatttagtt 498  Q
     ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||     
T  41448635 tttcagtagcaatgaacagagttctattggaaaaattaacaatgattggatacagcctatatggttaagtccgtaagcttgaaaaagcagttatttagta 41448536  T
Q  499 tgagagttaacaaacgaaattcgacgaaa 527  Q
    |||||||||||||||||||||||||||||    
T  41448535 tgagagttaacaaacgaaattcgacgaaa 41448507  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 41431967 - 41431799
Alignment:
Q  21 aagtatcgtcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctc 120  Q
    ||||||| |||| ||| ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41431967 aagtatcatcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctc 41431868  T
Q  121 caataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 189  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41431867 caataatcacagccctcatgagatccatccttgattcgaagactctcacaaatattgtatctgatgagc 41431799  T

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Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 41426566 - 41426407
Alignment:
Q  29 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 128  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  41426566 tcaaccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagactgtcatggtaaggagtcccttttgctccaataatc 41426467  T
Q  129 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgag 188  Q
    || ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  41426466 acagccctcatgagatccatccttgattcacagactctcacaaatattgtatctgatgag 41426407  T

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Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 41442557 - 41442406
Alignment:
Q  38 taccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccctc 137  Q
    ||||||||||||||||||||| ||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  41442557 taccgggggtacattgggatagccagttggaaagtgtacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagctctc 41442458  T
Q  138 atgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 189  Q
    | ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  41442457 aagagatccatccttgattcgcagactctcacaaatattgtatttgatgagc 41442406  T

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Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 41453772 - 41453664
Alignment:
Q  81 aaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtat 180  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  41453772 aaaaataaaagaccgtcatggtaaggagtctcttctgctccaataatcacagccctcaagagatccatccttgattcatagactctcacaaatattgtat 41453673  T
Q  181 ctgatgagc 189  Q
    |||||||||    
T  41453672 ctgatgagc 41453664  T

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Target: chr1; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 41449011 - 41448905
Alignment:
Q  16 atatgaagtatcgtcaagcacataccgggggtacattgggatatccaggggg-aaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtccctt 114  Q
    |||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||    
T  41449011 atatgaagtatcctcaaccacatactgggggtacattgggatatccaggggggaaagtaaacatcaaaaaagaaaagaccgttatggtaaggagtctctt 41448912  T
Q  115 ctgctcc 121  Q
    |||||||    
T  41448911 ctgctcc 41448905  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 52473066 - 52472991
Alignment:
Q  83 aaagaaaagaccgtcatgg-taaggagtcccttctgctccaataatcactgccctcatgagatccatccttgattc 157  Q
    |||| |||||||||||| | |||||||| || |||||||||||||| || ||||||| ||||||||||||||||||    
T  52473066 aaagtaaagaccgtcattgataaggagttccatctgctccaataattacagccctcaagagatccatccttgattc 52472991  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 471
Target Start/End: Complemental strand, 41453476 - 41453377
Alignment:
Q  372 ttcgataaaacgtgaactagccctaccaattcagtagcaatgaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtcc 471  Q
    |||||||| ||| ||||||| |||||||  ||| ||| ||||||| |||||   ||  |||||||||||||||||||||||| || ||||||| ||||||    
T  41453476 ttcgataagacgggaactagacctaccatgtcaatagtaatgaacgaagtttgtttaaaaaaattaacaatgattggatacaacccatatggtgaagtcc 41453377  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 7238212 - 7238245
Alignment:
Q  82 aaaagaaaagaccgtcatggtaaggagtcccttc 115  Q
    |||||||||||||||||||||||| |||||||||    
T  7238212 aaaagaaaagaccgtcatggtaagaagtcccttc 7238245  T

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Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 33370255 - 33370088
Alignment:
Q  21 aagtatcgtcaagcacataccggggg--tacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgc 118  Q
    ||||||| |||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33370255 aagtatcctcaaccacataccgggggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgc 33370156  T
Q  119 tccaataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatg 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33370155 tccaataatcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatg 33370088  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 33363903 - 33363748
Alignment:
Q  29 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 128  Q
    |||| ||| ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33363903 tcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatc 33363804  T
Q  129 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctga 184  Q
    || || |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33363803 acagctctcatgagatccatccttgattcgaagattctcacaaatattgtatctga 33363748  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 5839239 - 5839393
Alignment:
Q  34 cacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgc 133  Q
    |||||||||| |||||||||||| | |||   || ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||    
T  5839239 cacataccggcggtacattgggaaagccaccaggtaagtaaagatcgaaaaagaaaagaccgtcatggtaaggagtcccgtctgctccaataattacagc 5839338  T
Q  134 cctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgag 188  Q
    ||||||||||||||| |||||||| || ||||  |||||||||| ||||||||||    
T  5839339 cctcatgagatccattcttgattcataaactcgaacaaatattgaatctgatgag 5839393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 374 - 485
Target Start/End: Complemental strand, 33369903 - 33369792
Alignment:
Q  374 cgataaaacgtgaactagccctaccaattcagtagcaatgaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtccgt 473  Q
    |||||| || |||||||| ||||||| |||| |||||||||||  || || || | |||||||||||| ||||||||||| || ||||||||||||||||    
T  33369903 cgataagacatgaactagacctaccatttcaatagcaatgaacggagctcgatagaaaaaattaacaacgattggatacaacccatatggttaagtccgt 33369804  T
Q  474 aagcttgaaaaa 485  Q
     |||| ||||||    
T  33369803 cagctcgaaaaa 33369792  T

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Target: scaffold0648 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 6054 - 5894
Alignment:
Q  29 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 128  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6054 tcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 5955  T
Q  129 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 189  Q
    || ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  5954 acagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagc 5894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 17404 - 17564
Alignment:
Q  29 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 128  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17404 tcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 17503  T
Q  129 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 189  Q
    || ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  17504 acagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagc 17564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 7762943 - 7763103
Alignment:
Q  29 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 128  Q
    |||| ||| |||||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  7762943 tcaaccacgtaccgggggttcatcgggatattcagggggaaagtataaatcaaaaaagaaaagaccatcatggtaaggagtcccttgtgctccaataatc 7763042  T
Q  129 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 189  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7763043 acagctctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 7763103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 21223819 - 21223965
Alignment:
Q  36 cataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccc 135  Q
    |||||||| |||||||||||| | |||  ||||||| ||| |||||||||||| || || ||||| ||||| || || ||||||||||||||||| ||||    
T  21223819 cataccggaggtacattgggaaagccactgggaaagaaaaaatcaaaaaagaataggccatcatgataaggggttccctctgctccaataatcacagccc 21223918  T
Q  136 tcatgagatccatccttgattcgtagactctcacaaatattgtatct 182  Q
    |||  ||||| || |||||||| || ||||| |||||||||| ||||    
T  21223919 tcaacagatctattcttgattcataaactctgacaaatattgaatct 21223965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 1004782 - 1004661
Alignment:
Q  35 acataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgcc 134  Q
    |||||||||||||||| |||||||   |   || ||||||| ||||||||||||||||||||  |||||||||||||||| || ||||||||| || |||    
T  1004782 acataccgggggtacaatgggatagttactagggaagtaaaaatcaaaaaagaaaagaccgtgctggtaaggagtcccttttggtccaataattacagcc 1004683  T
Q  135 ctcatgagatccatccttgatt 156  Q
    ||||  |||| |||| ||||||    
T  1004682 ctcaacagattcatctttgatt 1004661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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