View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_110 (Length: 235)

Name: NF16177_high_110
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_110
NF16177_high_110
[»] chr4 (8 HSPs)
chr4 (4-221)||(20454017-20454248)
chr4 (1-37)||(4053732-4053768)
chr4 (2-37)||(14075240-14075275)
chr4 (2-37)||(28717048-28717083)
chr4 (1-35)||(45024502-45024536)
chr4 (4-37)||(38026556-38026589)
chr4 (2-35)||(39269485-39269518)
chr4 (1-37)||(23454428-23454464)
[»] chr8 (6 HSPs)
chr8 (128-176)||(36222968-36223016)
chr8 (2-38)||(38508498-38508534)
chr8 (2-37)||(109476-109511)
chr8 (2-37)||(38508153-38508188)
chr8 (1-37)||(17950833-17950869)
chr8 (1-37)||(32875588-32875624)
[»] chr7 (4 HSPs)
chr7 (1-37)||(21832132-21832168)
chr7 (1-37)||(29128205-29128241)
chr7 (2-37)||(13752045-13752080)
chr7 (3-37)||(43185117-43185151)
[»] chr5 (8 HSPs)
chr5 (2-37)||(16425248-16425283)
chr5 (2-37)||(16452972-16453007)
chr5 (2-37)||(28137758-28137793)
chr5 (2-36)||(38900535-38900569)
chr5 (4-37)||(26779787-26779820)
chr5 (4-37)||(43211484-43211517)
chr5 (1-37)||(17715338-17715374)
chr5 (1-29)||(40019469-40019497)
[»] chr3 (6 HSPs)
chr3 (2-37)||(1631223-1631258)
chr3 (4-37)||(9258729-9258762)
chr3 (1-37)||(16202463-16202499)
chr3 (1-37)||(18713473-18713509)
chr3 (2-34)||(26606964-26606996)
chr3 (1-37)||(30821298-30821334)
[»] chr6 (2 HSPs)
chr6 (4-37)||(34921300-34921333)
chr6 (1-29)||(5171751-5171779)
[»] chr2 (3 HSPs)
chr2 (1-37)||(35808615-35808651)
chr2 (1-37)||(39545705-39545741)
chr2 (1-37)||(41245702-41245738)
[»] chr1 (3 HSPs)
chr1 (1-37)||(6401696-6401732)
chr1 (1-37)||(13539139-13539175)
chr1 (1-37)||(44463486-44463522)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 20454248 - 20454017
Alignment:
Q  4 tataaaattttcaatcactatttttgttccctatatattctcaacaacttgaagtggaaagtggc---------------ctaagcaacaaccatatata 88  Q
    |||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||    
T  20454248 tataaaatttacaatcactacttttgg-ccctatatattctcaacaacttgaagtggaaagtggcagcatgtcctcttgcctaagcaacaaccatatata 20454150  T
Q  89 agaaaagtactatgcatttctaatttaataaatagggagacaagttcttcatcaaaacaaaatcttcatggaagtgcatctttgtgggatctatttattg 188  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  20454149 agaaaagtactatgcatttctaatttaataaatagagagacaagttcttcatcaaaacaaaatcttcatggaagggcatctttgtgggatttatttattg 20454050  T
Q  189 gaagtttttcactgagagaagaatgctccatat 221  Q
    ||||||||||| |||||||||||||||||||||    
T  20454049 gaagtttttcagtgagagaagaatgctccatat 20454017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4053768 - 4053732
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4053768 tcctataaaattttcaatcactatttttggtccctat 4053732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 14075240 - 14075275
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  14075240 cctataaaattttcaatcactatttttggtccctat 14075275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 28717083 - 28717048
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  28717083 cctataaaattttcaatcactatttttggtccctat 28717048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45024536 - 45024502
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccct 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  45024536 tcctataaaattttcaatcactatttttgatccct 45024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 38026589 - 38026556
Alignment:
Q  4 tataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||| |||||||||||||    
T  38026589 tataaaattttcaatcactacttttgttccctat 38026556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 39269485 - 39269518
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccct 35  Q
    |||||||||||||||||||||||||||| |||||    
T  39269485 cctataaaattttcaatcactatttttggtccct 39269518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23454428 - 23454464
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  23454428 tcctataaaattttcaatcactacttttggtccctat 23454464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 36223016 - 36222968
Alignment:
Q  128 acaagttcttcatcaaaacaaaatcttcatggaagtgcatctttgtggg 176  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36223016 acaagtttttcatcaaaacaaaatcttcatggaagtgcatctttgtggg 36222968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 38508534 - 38508498
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctata 38  Q
    |||||||||||||||||||||||||||| ||||||||    
T  38508534 cctataaaattttcaatcactatttttggtccctata 38508498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 109476 - 109511
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  109476 cctataaaattttcaatcactatttttggtccctat 109511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 38508188 - 38508153
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  38508188 cctataaaattttcaatcactatttttggtccctat 38508153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17950869 - 17950833
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||||||||  |||||||    
T  17950869 tcctataaaattttcaatcactatttttagtccctat 17950833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32875624 - 32875588
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32875624 tcctataaaattttcaatcactatttttagtccctat 32875588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21832132 - 21832168
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21832132 tcctataaaattttcaatcactatttttgatccctat 21832168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29128241 - 29128205
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  29128241 tcctataaaattttcaatcactatttttggtccctat 29128205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 13752045 - 13752080
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13752045 cctataagattttcaatcactatttttgttccctat 13752080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 43185117 - 43185151
Alignment:
Q  3 ctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||||||| |||||||    
T  43185117 ctataaaattttcaatcactatttttggtccctat 43185151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 16425283 - 16425248
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  16425283 cctataaaattttcaatcactatttttggtccctat 16425248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 16452972 - 16453007
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  16452972 cctataaaattttcaatcactatttttggtccctat 16453007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 28137793 - 28137758
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  28137793 cctataaaattttcaatcactatttttgatccctat 28137758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 38900535 - 38900569
Alignment:
Q  2 cctataaaattttcaatcactatttttgttcccta 36  Q
    |||||||||||||||||||||||||||| ||||||    
T  38900535 cctataaaattttcaatcactatttttggtcccta 38900569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 26779820 - 26779787
Alignment:
Q  4 tataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||| |||||||    
T  26779820 tataaaattttcaatcactatttttggtccctat 26779787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 43211484 - 43211517
Alignment:
Q  4 tataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||| |||||||    
T  43211484 tataaaattttcaatcactatttttgctccctat 43211517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17715374 - 17715338
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  17715374 tcctataaaattttcaatcactacttttggtccctat 17715338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 40019469 - 40019497
Alignment:
Q  1 tcctataaaattttcaatcactatttttg 29  Q
    |||||||||||||||||||||||||||||    
T  40019469 tcctataaaattttcaatcactatttttg 40019497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 1631258 - 1631223
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  1631258 cctataaaattttcaatcactatttttggtccctat 1631223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 9258729 - 9258762
Alignment:
Q  4 tataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||| |||||||    
T  9258729 tataaaattttcaatcactatttttggtccctat 9258762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16202463 - 16202499
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  16202463 tcctataaaattttcaatcactacttttggtccctat 16202499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18713509 - 18713473
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  18713509 tcctataaaattttcaatcactacttttggtccctat 18713473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 26606996 - 26606964
Alignment:
Q  2 cctataaaattttcaatcactatttttgttccc 34  Q
    |||||||||||||||||||||||||||| ||||    
T  26606996 cctataaaattttcaatcactatttttggtccc 26606964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30821298 - 30821334
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  30821298 tcctataaaattttcaatcactaattttggtccctat 30821334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 34921333 - 34921300
Alignment:
Q  4 tataaaattttcaatcactatttttgttccctat 37  Q
    |||||||||||||||||||||||||| |||||||    
T  34921333 tataaaattttcaatcactatttttggtccctat 34921300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5171779 - 5171751
Alignment:
Q  1 tcctataaaattttcaatcactatttttg 29  Q
    |||||||||||||||||||||||||||||    
T  5171779 tcctataaaattttcaatcactatttttg 5171751  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35808651 - 35808615
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  35808651 tcctataaaattttcaatcactacttttggtccctat 35808615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39545741 - 39545705
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  39545741 tcctataaaattttcaatcactacttttggtccctat 39545705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41245702 - 41245738
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  41245702 tcctataaaattttcaatcactacttttggtccctat 41245738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6401696 - 6401732
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  6401696 tcctataaaattttcaatcactacttttggtccctat 6401732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13539139 - 13539175
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13539139 tcctataaaattttcaatcactatttttagtccctat 13539175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44463522 - 44463486
Alignment:
Q  1 tcctataaaattttcaatcactatttttgttccctat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  44463522 tcctataaaattttcaatcactacttttggtccctat 44463486  T

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