View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_111 (Length: 228)
Name: NF16177_high_111
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_111 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 54 - 216
Target Start/End: Original strand, 43169344 - 43169506
Alignment:
| Q |
54 |
atgacactaagaactttggttaacttaattcaattacaaatatagttgtaaattatatacaagctgcggggtggtttttgtaaccattcatgacataaat |
153 |
Q |
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| T |
43169344 |
atgacactaagaactttggttaacttaattcaattacaaatatagttgtaaattatatacaagttgcagggtggtttttgtaaccattcatgacataaat |
43169443 |
T |
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| Q |
154 |
attgaatacaggtgaccgaatgaaatctaatgaagataggtgaaccgactgcaatggttcttc |
216 |
Q |
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| T |
43169444 |
attgaatacaggtgaccgaatggaatctaatgaagataggtgaactgactgcaatggttcttc |
43169506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 43169172 - 43169347
Alignment:
| Q |
1 |
cccaaatctatctgtgcttctgnnnnnnncatttgaactgaattgatgtagatatgacactaagaactttggttaacttaattcaattacaaatatagtt |
100 |
Q |
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| T |
43169172 |
cccaaatctatctgtgcttctgtttttttcatttgaactgaattgatgtagatatgacactaagaactttggttaacttaattcaattacaaatatagtt |
43169271 |
T |
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| Q |
101 |
gtaaattatatacaagctgcggggtggtttttgtaaccattcatgacataaatattgaatacaggtgaccgaatga |
176 |
Q |
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| T |
43169272 |
gaaaattatatacaagttgcagggtggtttttgtaaccattcatgacataaatattgaatacaggtgaccgaatga |
43169347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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