View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_112 (Length: 227)
Name: NF16177_high_112
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_112 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 16919610 - 16919390
Alignment:
| Q |
7 |
cttagtggaagaggttggtctcctcaatgtagattaacaattattgctgctatcgttaacatcatttctgctatttggtatgctaggaatcaatgcagat |
106 |
Q |
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| T |
16919610 |
cttagtgaaagaggttggtctccacagtgtagattaacaattattgctgctgttgttaacattatttctgctatttggtacgctaggaatcaatgcagat |
16919511 |
T |
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| Q |
107 |
tccaaaataggaggattcattggaagagtgctatatctcatatcactgtaaatgtttctctgtctgctagcaactctaatttatcagctagctctgatat |
206 |
Q |
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| T |
16919510 |
tccaaaataggaggattcattggaagagtgctatatctcatatcactgtaaatgtttccctatctgctagcaactctaacttatcagctagctctgatat |
16919411 |
T |
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| Q |
207 |
tagagaattctccattcttaa |
227 |
Q |
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| T |
16919410 |
tagagaattctccattcttaa |
16919390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 14627905 - 14627760
Alignment:
| Q |
73 |
tctgctatttggtatgctaggaatcaatgcagattccaaaataggaggattcattggaagagtgctatatctcatatcactgtaaatgtttctctgtctg |
172 |
Q |
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| T |
14627905 |
tctgctatttggaatgctagaaatacttatagattcaaaaacaggaagattcattgggaaagtgtcatatctcaaatcattgttaatgtttctttgtctg |
14627806 |
T |
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| Q |
173 |
ctagcaactctaatttatcagctagctctgatattagagaattctc |
218 |
Q |
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| T |
14627805 |
caagtaattctaagttgtcagctagttctggcattagagaattctc |
14627760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 189478 - 189623
Alignment:
| Q |
73 |
tctgctatttggtatgctaggaatcaatgcagattccaaaataggaggattcattggaagagtgctatatctcatatcactgtaaatgtttctctgtctg |
172 |
Q |
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|||||||||||| ||||||| ||| | |||||| |||| |||| |||||||||| | |||| |||||||| |||| ||| ||||||||| |||||| |
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| T |
189478 |
tctgctatttggaatgctagaaatacttatagattcaaaaacaggaagattcattgggaaagtgtcatatctcaaatcattgttaatgtttctttgtctg |
189577 |
T |
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| Q |
173 |
ctagcaactctaatttatcagctagctctgatattagagaattctc |
218 |
Q |
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| T |
189578 |
caagtaattctaagttgtcagctagttctggcattagagaattctc |
189623 |
T |
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