View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_114 (Length: 226)

Name: NF16177_high_114
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_114
NF16177_high_114
[»] chr7 (4 HSPs)
chr7 (7-108)||(48874484-48874585)
chr7 (19-91)||(48886544-48886616)
chr7 (149-226)||(41739679-41739756)
chr7 (109-152)||(45291971-45292014)
[»] chr3 (8 HSPs)
chr3 (149-216)||(20997690-20997757)
chr3 (149-226)||(9099617-9099694)
chr3 (149-226)||(20998938-20999015)
chr3 (107-145)||(18912546-18912584)
chr3 (164-226)||(36164503-36164565)
chr3 (109-153)||(18939871-18939915)
chr3 (108-152)||(36163382-36163426)
chr3 (104-152)||(36164594-36164642)
[»] chr4 (4 HSPs)
chr4 (149-226)||(30829984-30830061)
chr4 (149-226)||(52190296-52190373)
chr4 (109-153)||(41774644-41774688)
chr4 (109-153)||(41780270-41780314)
[»] chr8 (5 HSPs)
chr8 (106-153)||(5014841-5014888)
chr8 (109-153)||(5005708-5005752)
chr8 (109-146)||(12887749-12887786)
chr8 (107-152)||(17863464-17863509)
chr8 (112-152)||(32564510-32564550)
[»] chr5 (2 HSPs)
chr5 (149-226)||(38921512-38921589)
chr5 (149-226)||(35968623-35968700)
[»] chr1 (6 HSPs)
chr1 (149-226)||(35063549-35063626)
chr1 (102-146)||(26531114-26531158)
chr1 (109-152)||(26529508-26529551)
chr1 (156-226)||(26529572-26529642)
chr1 (38-66)||(2899718-2899746)
chr1 (109-153)||(26530502-26530546)
[»] chr2 (6 HSPs)
chr2 (109-153)||(31622122-31622166)
chr2 (105-153)||(35298552-35298600)
chr2 (108-152)||(40894889-40894933)
chr2 (156-219)||(31622039-31622102)
chr2 (165-226)||(4753601-4753662)
chr2 (109-153)||(35306126-35306170)
[»] chr6 (5 HSPs)
chr6 (109-152)||(226121-226164)
chr6 (109-152)||(9448784-9448827)
chr6 (101-152)||(18193023-18193074)
chr6 (164-226)||(18192932-18192994)
chr6 (100-146)||(30758896-30758941)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 48874585 - 48874484
Alignment:
Q  7 tccaagaatataaaaaataactgacaataatataattccctcaattttaaaatacatttttgtatgatgaaattgagatgttgtctttcatgatcttttt 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48874585 tccaaaaatataaaaaataactgacaataatataattccctcaattttaaaatacatttttgtatgatgaaattgagatgttgtctttcatgatcttttt 48874486  T
Q  107 at 108  Q
    ||    
T  48874485 at 48874484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 48886616 - 48886544
Alignment:
Q  19 aaaaataactgacaataatataattccctcaattttaaaatacatttttgtatgatgaaattgagatgttgtc 91  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48886616 aaaaaaaaatgacaataatataattccctcaattttaaaatacatttttgtatgatgaaattgagatgttgtc 48886544  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 41739679 - 41739756
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    ||||||||||| ||| |||||||||  ||||| | ||||||||||| ||||   ||||||||||||||||||||||||    
T  41739679 atcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaa 41739756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 45292014 - 45291971
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatca 45291971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 20997690 - 20997757
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaac 216  Q
    |||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20997690 atcaataaaacaaaccaaaaactccttcaatgttggtttcgttagtcaaataagtccaaaacgttaac 20997757  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 9099617 - 9099694
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    ||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  9099617 atcaatgaaacgaaccaaaaactctttcaatgttggttccgttagtcaaataagtccaaaacgttaacttagtgttaa 9099694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 20999015 - 20998938
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    ||||||||||  || |||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  20999015 atcaatgaaatgaattaaaaacttcttcaatgttgattccgttagttaaataagtccaaaacgttaacttagtgttaa 20998938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 18912546 - 18912584
Alignment:
Q  107 atgagtaaaccctcatttggatccttgaaagtgtacctc 145  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  18912546 atgagtaaaccctcatttgggtccctgaaagtgtacctc 18912584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 36164565 - 36164503
Alignment:
Q  164 taaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    |||||||||  |||||||| ||| ||||||| || | | ||||||||||||||||||||||||    
T  36164565 taaaaactctctcaatgttagttccgttagtcaatttaatccaaaacgttaacttggtgttaa 36164503  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 18939915 - 18939871
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    |||||||||||||||||| ||| ||||||||||| ||| ||||||    
T  18939915 gagtaaaccctcatttgggtccctgaaagtgtacttcgctatcaa 18939871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 36163382 - 36163426
Alignment:
Q  108 tgagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    |||||||||| |||||||||||| ||||||||| ||||| |||||    
T  36163382 tgagtaaaccttcatttggatccctgaaagtgtccctcgctatca 36163426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 36164642 - 36164594
Alignment:
Q  104 tttatgagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    |||| |||||||||||||||||| ||| ||||||||| ||||| |||||    
T  36164642 tttaagagtaaaccctcatttgggtccctgaaagtgtccctcgctatca 36164594  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 30829984 - 30830061
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    ||||||||||| ||| |||||||||  ||||| | ||||||||||| ||||   ||||||||||||||||||||||||    
T  30829984 atcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaa 30830061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 52190373 - 52190296
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    |||||| |||| ||| |||||||||  ||||||  |||| |||||| ||||   ||||||||||||||||||||||||    
T  52190373 atcaattaaacgaaccaaaaactcccccaatgtctgttttgttagtcaaatgcatccaaaacgttaacttggtgttaa 52190296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 41774644 - 41774688
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    |||||||| ||||||||| ||| ||||||||||||||| ||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaa 41774688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 41780314 - 41780270
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    |||||||||||||||||| ||  ||||||||||||||| ||||||    
T  41780314 gagtaaaccctcatttgggtctctgaaagtgtacctcgctatcaa 41780270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 5014888 - 5014841
Alignment:
Q  106 tatgagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  5014888 tatgagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaa 5014841  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 5005708 - 5005752
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||    
T  5005708 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaa 5005752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 12887786 - 12887749
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcg 146  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  12887786 gagtaaaccctcatttgggtccctgaaagtgtacctcg 12887749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 17863464 - 17863509
Alignment:
Q  107 atgagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    |||||||||||||||||||| ||| |||||||| |||||| |||||    
T  17863464 atgagtaaaccctcatttgggtccctgaaagtgcacctcgctatca 17863509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 32564510 - 32564550
Alignment:
Q  112 taaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    ||||||||||||||| ||||||||||||| ||||| |||||    
T  32564510 taaaccctcatttgggtccttgaaagtgtccctcgctatca 32564550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 38921512 - 38921589
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    ||||||||||  ||| |||||||||  ||||| | ||||||||||| ||||   ||||||||||||||||||||||||    
T  38921512 atcaatgaaatgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaa 38921589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 35968700 - 35968623
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    ||||||||||| ||| |||||||||  ||||  | |||| |||||| ||||   ||||||||||||||||||||||||    
T  35968700 atcaatgaaacgaaccaaaaactcccccaattattgttttgttagtcaaatgcatccaaaacgttaacttggtgttaa 35968623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 35063626 - 35063549
Alignment:
Q  149 atcaatgaaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    ||||||||||| ||| |||||||||  ||||  | ||||||||||| ||||   ||||||||||||||||||||||||    
T  35063626 atcaatgaaacgaaccaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaa 35063549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 26531158 - 26531114
Alignment:
Q  102 tttttatgagtaaaccctcatttggatccttgaaagtgtacctcg 146  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||    
T  26531158 tttttatgagtaaaccctcattttggtccctgaaagtgtacctcg 26531114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 26529508 - 26529551
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatca 26529551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 26529572 - 26529642
Alignment:
Q  156 aaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    |||| ||||||||||||| |||||||| |||  |||||| ||||   ||||||||||||||||| ||||||    
T  26529572 aaacgaactaaaaactccctcaatgtttgttctgttagtcaaatgcatccaaaacgttaacttgatgttaa 26529642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 2899718 - 2899746
Alignment:
Q  38 ataattccctcaattttaaaatacatttt 66  Q
    |||||||||||||||||||||||||||||    
T  2899718 ataattccctcaattttaaaatacatttt 2899746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 26530502 - 26530546
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    ||||||||| |||||||| ||| ||||||||||||||| ||||||    
T  26530502 gagtaaaccttcatttgggtccctgaaagtgtacctcgctatcaa 26530546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 31622166 - 31622122
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaa 31622122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 35298552 - 35298600
Alignment:
Q  105 ttatgagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    |||||||||||||||||||||| | | ||||||||||||||| ||||||    
T  35298552 ttatgagtaaaccctcatttgggttcctgaaagtgtacctcgctatcaa 35298600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 40894933 - 40894889
Alignment:
Q  108 tgagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||    
T  40894933 tgagtaaaccctcatttggatccctaaaagtgtacctcgctatca 40894889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 31622102 - 31622039
Alignment:
Q  156 aaacaaactaaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttg 219  Q
    |||||||||||||||||| |||||||| ||| |||| || ||||   |||||||||||||||||    
T  31622102 aaacaaactaaaaactccctcaatgtttgttccgtttgtcaaatgcatccaaaacgttaacttg 31622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 4753601 - 4753662
Alignment:
Q  165 aaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    ||||||||| |||||||  |||| |||||| ||||   ||||||||||||||||||||||||    
T  4753601 aaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacgttaacttggtgttaa 4753662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 35306170 - 35306126
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatcaa 153  Q
    |||||||||||||||| | ||| ||||||||||||||| ||||||    
T  35306170 gagtaaaccctcatttaggtccctgaaagtgtacctcgctatcaa 35306126  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 226121 - 226164
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||    
T  226121 gagtaaaccctcatttgggtccttgaaagtgtgcctcgctatca 226164  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 9448827 - 9448784
Alignment:
Q  109 gagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatca 9448784  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 18193074 - 18193023
Alignment:
Q  101 ctttttatgagtaaaccctcatttggatccttgaaagtgtacctcgttatca 152  Q
    ||||||| |||||||||||||||||| ||| ||||||||| ||||| |||||    
T  18193074 ctttttaagagtaaaccctcatttgggtccctgaaagtgtccctcgctatca 18193023  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 18192994 - 18192932
Alignment:
Q  164 taaaaactccttcaatgttggtttcgttagttaaataagtccaaaacgttaacttggtgttaa 226  Q
    |||||||||| |||||||| |||  |||||| || | | ||||||||||||||||||||||||    
T  18192994 taaaaactccctcaatgttagttctgttagtcaatttaatccaaaacgttaacttggtgttaa 18192932  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 30758941 - 30758896
Alignment:
Q  100 tctttttatgagtaaaccctcatttggatccttgaaagtgtacctcg 146  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||    
T  30758941 tcttttta-gagtaaaccctcatttgggtccttgaaagtgtccctcg 30758896  T

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