View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_high_15 (Length: 520)
Name: NF16177_high_15
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_15 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 59 - 520
Target Start/End: Complemental strand, 12522852 - 12522397
Alignment:
| Q |
59 |
caataactactaatttcggccggacattctattagacaa--ttatccttaacttgcttgtctttctgctaattttatgatgaaaagtatattaatagttg |
156 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| ||||| ||| | ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12522852 |
caataactactaattttggacggacattctattagacaaaattatcattagc--------ctttccgctaattttatgatgaaaagtatattaatagttg |
12522761 |
T |
|
| Q |
157 |
atggtaggttcacacatgttcaataaacatgttctagaatgattaacttgttat--gcaagaaaaaagtgttgtgcctaattcattttactttgaacttt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12522760 |
atggtaggttcacacatgttcaataaacatgctctagaatgattaacttgttatatgcaagaaaaaagtgctgtgcctaattcattttactttgaacttt |
12522661 |
T |
|
| Q |
255 |
ttgcatataacaacgaattgaaagaatgaaatattggtagttcaataaaatcttaccatcaatcaacacctttcctgatgttggatcataaaatctgagt |
354 |
Q |
| |
|
|||||||||| || || ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12522660 |
ttgcatataaaaatga-ttgaaagaatgaaatgttggtagttcaa-aaaatcttaccatcaattaacacctttcctgatgttggatcataaaatctgagt |
12522563 |
T |
|
| Q |
355 |
ataagtgagatcacagagcttttaccagaaccactttgtcccactaaggcaacacttttgcctgaaggaactcttagactaaaatccttgaaaataataa |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12522562 |
ataagtgagatcacagagcttttaccagaaccactttgtcccactaaggcaacacttttgcctgaaggaactcttagactaaaatccttgaaaataataa |
12522463 |
T |
|
| Q |
455 |
catctggccttgaagggtagctgaaattgattcttttgagctcaattgttccctcgactgtcttca |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12522462 |
catctggccttgaagggtagctgaaattgattcttttgagctcaattgttccctcgactgtcttca |
12522397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12522943 - 12522876
Alignment:
| Q |
1 |
ttaggacaatgtcatagcatctataccgtaatataaatgaaactctaaagttaactatcaataactac |
68 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12522943 |
ttaggacaatgtcgtagcatctataacataatataaacgaaactctaaagttaactatcaataactac |
12522876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 307 - 500
Target Start/End: Complemental strand, 27730729 - 27730536
Alignment:
| Q |
307 |
ttaccatcaatcaacacctttcctgatgttggatcataaaatctgagtataagtgagatcacagagcttttaccagaaccactttgtcccactaaggcaa |
406 |
Q |
| |
|
||||||||||||| |||||| || || |||||||||||||||||||||||||| ||||| | |||||||||||||||||||| || || || ||||||| |
|
|
| T |
27730729 |
ttaccatcaatcatcaccttcccggacgttggatcataaaatctgagtataagggagattattgagcttttaccagaaccactgtgccctaccaaggcaa |
27730630 |
T |
|
| Q |
407 |
cacttttgcctgaaggaactcttagactaaaatccttgaaaataataacatctggccttgaagggtagctgaaattgattcttttgagctcaat |
500 |
Q |
| |
|
||| || |||||||| ||| ||||| | |||||||| ||||||| |||| ||| |||||||| ||| | |||||||| ||||| |||||||| |
|
|
| T |
27730629 |
gactcttccctgaaggcactattagattgaaatccttaaaaataacgacatttggtcttgaaggatagataaaattgatcctttttagctcaat |
27730536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University