View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_16 (Length: 518)
Name: NF16177_high_16
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 72 - 505
Target Start/End: Complemental strand, 8310077 - 8309640
Alignment:
| Q |
72 |
gagaaacaatttatggtgaaatggttggctgagcgggataatcttgatgaagaagaagtggatcaatgggcgataaacaatgctgctatgatcattaaga |
171 |
Q |
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| T |
8310077 |
gagaaacaatttatggtgaaatggttggctgagcgggataatcttgatgaagaagaagtggatcaatgggcgataaacaatgctgctatgatcattaaga |
8309978 |
T |
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| Q |
172 |
tttatacggcattgggatttatcagaaacattaggccggttgttaagttgcttgatgatattcagatttcaaatgagaacgtggaggcaatgagagctga |
271 |
Q |
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| T |
8309977 |
tttatacggcattgggatttatcagaaacattaggccggttgttaagttgcttgatgatattgagatttcaaatgagaacgtggaggcaatgagagctga |
8309878 |
T |
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| Q |
272 |
tatggaatcaatggaggttagagtgaagtgtctcgaaaactttattcggatttatttcaagcgcggatctatctcaagtcagtaacatcttc----atat |
367 |
Q |
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| T |
8309877 |
tatggaatcaatggaggttagagtgaagtgtctcgaaaactttattcggatttatctcaagcgcggatctatctcaagtcagtaacatcttcatatatat |
8309778 |
T |
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| Q |
368 |
tctcatttatgattaatatcaatgctttcgtgcgttttgctagattatcttgtatggttgcttctttttgcttatttatttaaaaccaatgaaggattaa |
467 |
Q |
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| T |
8309777 |
tctcatttatgattaatatcaatgctttcgcgcgttttgctagattatcttgtatggttgcttctttttgcttatttatttaaaaccaatgaaggattaa |
8309678 |
T |
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| Q |
468 |
tgtcggttatcttcatgttatattgtttgtgttcaaag |
505 |
Q |
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| T |
8309677 |
tgtcggttatcttcatgttatattgtttgtgttcaaag |
8309640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 222 - 350
Target Start/End: Complemental strand, 27662942 - 27662814
Alignment:
| Q |
222 |
cttgatgatattcagatttcaaatgagaacgtggaggcaatgagagctgatatggaatcaatggaggttagagtgaagtgtctcgaaaactttattcgga |
321 |
Q |
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| T |
27662942 |
cttgatgatatacagatttcaaatggcaacgtggaggcaatgagagttgatgtggaatctatggaggaaagggtgaagggtctggaaagctttatacgga |
27662843 |
T |
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| Q |
322 |
tttatttcaagcgcggatctatctcaagt |
350 |
Q |
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| T |
27662842 |
tttaccttaagtgcggatctatctcaagt |
27662814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 27663044 - 27662957
Alignment:
| Q |
72 |
gagaaacaatttatggtgaaatggttggctgagcgggataatcttgatgaagaagaagtggatcaatgggcgataaacaatgctgcta |
159 |
Q |
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| T |
27663044 |
gagaaacaatttatgatgaacttgttgcctgagcggaataattttgatgaagaagaaaggaaacgatgggcgataaacaatgcagcta |
27662957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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