View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_2 (Length: 671)
Name: NF16177_high_2
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 51397562 - 51397204
Alignment:
| Q |
16 |
gatcctactacttgtagaagctctaacacatatttctcgccggatgcatttggcaatgttggagaatttcaattactgtgtcaataggttttagttgaac |
115 |
Q |
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| T |
51397562 |
gatcctactacttgtagaagctctaacacatatttctcgccggatgcatttggcaatgttggagaatttcaattactgtgtcaataggttttagttgaac |
51397463 |
T |
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| Q |
116 |
tgcagaggcctggaagcatataagcttgtcaattttgcttcgtttcagctgtttttagcatgggactggatctggtattacaatgctgctctgcattttt |
215 |
Q |
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| T |
51397462 |
tgcagaggcttggaagcatataagcttgtcaattttgcttcgtttcagctgtttttagcatgggactggatctggtattacaatgctgctctgcattttt |
51397363 |
T |
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| Q |
216 |
attctgtaattctgttttggatatattttctcagctctttagtgttgtgtttagttttccaaagtttctctcttgaaatctatgaaatcaaaagttcact |
315 |
Q |
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| T |
51397362 |
attctgtaattctgttttggatatattttctcagctctttagtgttgtgtttagttttccaaagtttctctcttgaaatctatgaattcaaaagttcact |
51397263 |
T |
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| Q |
316 |
atcagatatgaatacatttacgttctgaatgacaaagtgagttgctggttatttttgtt |
374 |
Q |
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| T |
51397262 |
atcagatatgaatacatttacgttctgaatgacaaagtgagttgctagttatttttgtt |
51397204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 386 - 659
Target Start/End: Complemental strand, 51397168 - 51396892
Alignment:
| Q |
386 |
ctatatgtatcttaatggtgttgtgtgttttagttttcctccgtaataacaattcactataattttgaagtggnnnnnnnnnn---aattacaggtgaag |
482 |
Q |
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| T |
51397168 |
ctatatttatcttaatggtgtcgtgtgttttagttttcctccgtaataacattttactataattttgaagtggttgttttttttttaattacaggtgaag |
51397069 |
T |
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| Q |
483 |
aaaattgacatttattctgttagcaatcctgagccagaatcggtaacatcaaaattcatgttcaagtcatatatcagcggtaacttttcttatgataggc |
582 |
Q |
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| T |
51397068 |
aaaattgacatttattctgttagcaatcctgagctagaatcggtaacatcaaaattcatgttcaagtcatatatcagcggtaacttttcttatgataggc |
51396969 |
T |
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| Q |
583 |
ttgttttgtttatgtgtttaatttcaagacgtgccgctaatatttctgtttttagttaattcccctccccctttgct |
659 |
Q |
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| T |
51396968 |
ttgttttgctaatgtgtttaatttcaagacgtgccgctaatatttctgtttttagttaattcccctccccctttgct |
51396892 |
T |
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