View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_20 (Length: 499)
Name: NF16177_high_20
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 481
Target Start/End: Complemental strand, 329251 - 328784
Alignment:
| Q |
14 |
agataattagaggcaacactcaccaatacacatgtcactttcccgcacatagaataaaccattattgcatctgcattcataacttccccaggtatttttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
329251 |
agataattagaggcaacactcaccaatacacatgtcactttcccgcacatagaataaaccattattgcatctgcattcataacttccccaggtatttttg |
329152 |
T |
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| Q |
114 |
cagttgcattctgggcactgacaggccaatttctctttgcattcatcgacatcttcaacattatcaaaatgtcactggcatatatatttgtcatgcacta |
213 |
Q |
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| T |
329151 |
cagttgcattctgggcactgacaggccaatttctctttgcattcatcgacatcttcaacattatcaaaatgtcactggcatatatatttgtcatgcacta |
329052 |
T |
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| Q |
214 |
tacaatggaatgtttaaaacaaatttagtacctttacaggagcggactccatcacccctgaatccaggtggacacttgcaaccttttgtacggtcatcct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
329051 |
tacaatggaatgtttaaaacaaatttagtacctttacaggagtggactccatcacccctgaatccaggtggacacttgcaaccttttgtacggtcatcct |
328952 |
T |
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| Q |
314 |
gcattatcaattcagaaacaaaagatatataatcaaaataatcatgtatgtatatgaaaggatgcagatgaggagaggactacttacgatacaagcagag |
413 |
Q |
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| T |
328951 |
gcattatcaattcagaaacaaaagatatataatcaaaataatcatatatgtatatgaaaggatgcagatgaggagaggactacttacgatacaagcagag |
328852 |
T |
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| Q |
414 |
taagccctgccacctcgggctcccttccaacaacctccattgttgactgaacacctcaatggtccact |
481 |
Q |
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| T |
328851 |
taagccctgccacctcgggctcccttccaacaacctccattgttgactgcacacctcaatggtccact |
328784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 27411222 - 27411365
Alignment:
| Q |
31 |
actcaccaatacacatgtcactttcccgcacatagaataaaccattattgcatctgcattcataacttccccaggtatttttgcagttgcattctgggca |
130 |
Q |
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|||||||||||||| ||||| |||| || |||| ||||| ||||||| |||| |||||||| || ||||||||||||| ||||||| ||| || |
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| T |
27411222 |
actcaccaatacacgtgtcattttctcgtgagtagagcaaaccgctattgcacttgcactcataactcccaaaggtatttttgcatttgcattgtggaca |
27411321 |
T |
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| Q |
131 |
ctgacaggccaatttctctttgcattcatcgacatcttcaacat |
174 |
Q |
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| T |
27411322 |
ctggcaagccgacttttctttgcattcatcaatatctgcaacat |
27411365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 27411534 - 27411625
Alignment:
| Q |
243 |
acctttacaggagcggactccatcacccctgaatccaggtggacacttgcaaccttttgtacggtcatcctgcattatcaattcagaaacaa |
334 |
Q |
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||||| ||| || |||||||| ||||| ||||| || | || |||| |||||||||| || |||||||||||||||||||| |||||||| |
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| T |
27411534 |
accttcacatgaccggactccgtcacctctgaaccctgacgggcactcgcaaccttttctatagtcatcctgcattatcaattaagaaacaa |
27411625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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