View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_23 (Length: 482)
Name: NF16177_high_23
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 28095155 - 28094695
Alignment:
| Q |
1 |
acgaaaaacaatccaaacagaagagaaaactctatctcatctaaaaagcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095155 |
acgaaaaacaatccaaacagaagagaaaactctatctgatctaaaaagcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaac |
28095056 |
T |
|
| Q |
101 |
tggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgtttggcctggaacacatgattctgcaacggacaaaatcggcataccaggaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095055 |
tggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgtttggcctggaacacatgattctgcaacggacaaaatcggcataccaggaatct |
28094956 |
T |
|
| Q |
201 |
ctcgtcctttcgcacaatgccaaaccatatccatctataatcagcttgtaagaggaacacgagtgttcgacattcgcgtgcaagaggatcgaagagtatg |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28094955 |
ctcgtcctttcgcacaatgccaaaccttatccatctataatcagcttgtaagaggaacacgggtgttcgacattcgcgtgcaagaggatcgaagagtatg |
28094856 |
T |
|
| Q |
301 |
tcacggaattctcctcacgtacagcgtagacgttgtcataaaagacataaaaaagttcttatcagaaaccgtatccgaaatcataatcctcgaggttaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094855 |
tcacggaattctcctcacgtacagcgtagacgttgtcataaaagacataaaaaagttcttatcagaaaccgtatccgaaatcataatcctcgaggttaga |
28094756 |
T |
|
| Q |
401 |
actgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcg |
461 |
Q |
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| T |
28094755 |
actgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcg |
28094695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 26155604 - 26155772
Alignment:
| Q |
3 |
gaaaaacaatccaaacagaagagaaaactctatctcatctaaaaagcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactg |
102 |
Q |
| |
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|||| |||||||| || ||| ||||||||||| | | || |||| || ||||||| |||||||||||| ||| || || |||||||| ||||||||||| |
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| T |
26155604 |
gaaagacaatccacaccgaaaagaaaactctaaccgaacttaaaacctcaggagaagactaccctggttctgaatatcatccatcagatagaaaaaactg |
26155703 |
T |
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| Q |
103 |
gatggcaaatctcaaccctgacaaacttaagatcaaaatgattgtttggcctggaacacatgattctgc |
171 |
Q |
| |
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|||| ||||||||| || ||| || | ||||| ||||| ||||| ||||||||||||||||| |
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| T |
26155704 |
gatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatggccaggaacacatgattctgc |
26155772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 26168902 - 26169070
Alignment:
| Q |
3 |
gaaaaacaatccaaacagaagagaaaactctatctcatctaaaaagcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactg |
102 |
Q |
| |
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|||| |||||||| || ||| ||||||||||| | | || |||| || ||||||| |||||||||||| ||| || || |||||||| ||||||||||| |
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| T |
26168902 |
gaaagacaatccacaccgaaaagaaaactctaaccgaacttaaaacctcaggagaagactaccctggttctgaatatcatccatcagatagaaaaaactg |
26169001 |
T |
|
| Q |
103 |
gatggcaaatctcaaccctgacaaacttaagatcaaaatgattgtttggcctggaacacatgattctgc |
171 |
Q |
| |
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|||| ||||||||| || ||| || | ||||| ||||| ||||| ||||||||||||||||| |
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| T |
26169002 |
gatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatggccaggaacacatgattctgc |
26169070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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