View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_24 (Length: 477)

Name: NF16177_high_24
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_24
NF16177_high_24
[»] chr3 (8 HSPs)
chr3 (16-271)||(25361580-25361835)
chr3 (320-401)||(25361450-25361531)
chr3 (323-399)||(25356783-25356859)
chr3 (323-399)||(25349576-25349651)
chr3 (323-391)||(25352122-25352190)
chr3 (202-271)||(25356914-25356986)
chr3 (202-269)||(25349711-25349781)
chr3 (174-235)||(25352285-25352346)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 25361835 - 25361580
Alignment:
Q  16 caaataatcgactccatgcacgtagtactactaagaagacggaagaattagagcaagaagtgcgtgctgatgtagagcctctggatcgagatattttagc 115  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25361835 caaataatcgactccatgcacgcagtacttctaagaagacggaaggattagagcaagaagtgcgtgctgatgtagagcctctggatcgagatattttagc 25361736  T
Q  116 tacaaacacatttgctgagccaatttctacgatgaaacttgtaccaacaactgcggatcctgtaccatctgatgtgagcctgtttgtcttcattttattt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25361735 tacaaacacatttgctgagccaatttctacgatgaaacttgtaccaacaactacggatcctgtaccatctgatgtgagcctgtttgtcttcattttattt 25361636  T
Q  216 caattcgtagttactcaataatagactttatgtaacatctctattggatattgtag 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25361635 caattcgtagttactcaataatagactttatgtaacatctctattggatattgtag 25361580  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 25361531 - 25361450
Alignment:
Q  320 gtaaggactagtgatagattgagaaccttgaccttcaaaagagtatatgatggtcctgggagagatgcaaccagtccaatcg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  25361531 gtaaggactagtgatagattgagaaccttgaccttcaaaagatcatatgatggtcctgggagagatgcaagcagtccaatcg 25361450  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 25356859 - 25356783
Alignment:
Q  323 aggactagtgatagattgagaaccttgaccttcaaaagagtatatgatggtcctgggagagatgcaaccagtccaat 399  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  25356859 aggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggtcctgggaaagatgcagccagtccaat 25356783  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 25349651 - 25349576
Alignment:
Q  323 aggactagtgatagattgagaaccttgaccttcaaaagagtatatgatggtcctgggagagatgcaaccagtccaat 399  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||||    
T  25349651 aggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggt-ctgggagagatgcaactagtccaat 25349576  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 25352190 - 25352122
Alignment:
Q  323 aggactagtgatagattgagaaccttgaccttcaaaagagtatatgatggtcctgggagagatgcaacc 391  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||    
T  25352190 aggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatgcaacc 25352122  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 25356986 - 25356914
Alignment:
Q  202 tcttcattttatttcaattcgta---gttactcaataatagactttatgtaacatctctattggatattgtag 271  Q
    |||||||||||||||||||| ||   |||||| |||||| |||||||||||||| |||| |||||| ||||||    
T  25356986 tcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctctcttggatgttgtag 25356914  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 25349781 - 25349711
Alignment:
Q  202 tcttcattttatttcaattcgta---gttactcaataatagactttatgtaacatctctattggatattgt 269  Q
    |||||||||||||||||||| ||   |||||| |||||| |||||||||||||| || | |||||||||||    
T  25349781 tcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctttcttggatattgt 25349711  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 25352346 - 25352285
Alignment:
Q  174 cctgtaccatctgatgtgagcctgtttgtcttcattttatttcaattcgtagttactcaata 235  Q
    |||||||||||| ||||||| ||   | |||||||||||||||||||| |||||||| ||||    
T  25352346 cctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaata 25352285  T

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