View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_27 (Length: 461)
Name: NF16177_high_27
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 5012868 - 5013302
Alignment:
| Q |
18 |
attcttcccataaagaccaagattttccttccaagtgatacacaaaataccaagattttaatgttttggactgtgacaagttagttaatttcagcatatt |
117 |
Q |
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| T |
5012868 |
attcttcccataaagaccaagattttccttccaagtgatacacaaaataccaagattttaatgttttggactgtgacaagttagttaatttcagcatatt |
5012967 |
T |
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| Q |
118 |
ttttgttatgatgttttaaatagttattccctttttgttaattaattcatatttggttccaaatgtgaaacttaattttccatttggtttaataatctat |
217 |
Q |
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| T |
5012968 |
ttttgttatgatgttttaaatagttattccctttttgttaattaattcatatttggttccaaatgtgaaacttaattttccatttagtttaataatctat |
5013067 |
T |
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| Q |
218 |
gccatgcaaaggtttagcaacaatgaatttttcaagtgcaagagctctctatgaagtgataataaattgttctagaagtgaaagcatgctcagaaaaatt |
317 |
Q |
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| T |
5013068 |
gccatgcaaaggtttagcaacaatgaatttttcaagtgcaagagctctctatgaagtgataataaattgttctagaagtgaaagcatgctcagaaaaatt |
5013167 |
T |
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| Q |
318 |
aacttacttattctctaaattgagaaagctatatatgaagnnnnnnnnaagagaaagctatgaagttagaattaaaattataatttttaatacgggtttg |
417 |
Q |
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| T |
5013168 |
aacttacttattctctaaattgagaaagctatatatgaag-tttttttaagagaaagctatgaagttagaattaaaattataatttttaatacgggtttg |
5013266 |
T |
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| Q |
418 |
aatgagacaaaattctataatctagtgccctatgct |
453 |
Q |
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| T |
5013267 |
aatgagacaaaattctataatctagtgccctatgct |
5013302 |
T |
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