View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_29 (Length: 437)
Name: NF16177_high_29
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_29 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Complemental strand, 6809766 - 6809344
Alignment:
| Q |
15 |
ggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagcgcgcttctttatacaagtatgattttaca |
114 |
Q |
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| T |
6809766 |
ggtagagaaaatccaaaggaggaaggaaaaacatattcgggctaagcaagtaatgaatgaactgattcagcatgcttctttattcaagtatgatttcaca |
6809667 |
T |
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| Q |
115 |
ggaccaagtcctcatgttgaagatcatggtggtgataacatgggtaaaataaagagctatacagaaaatgaggctattgagaaaaggagaacagtgtcac |
214 |
Q |
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| T |
6809666 |
ggaccaagttctaatgttgaagagaatggtggtgatgacataggtaaaataaagagcaatacagaaaatgaggctattgcgaaaaggagaacaatgtcac |
6809567 |
T |
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| Q |
215 |
ctattttaattgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggacagtcagaacaaaaa |
314 |
Q |
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| T |
6809566 |
caattttaatcgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggacagtcagaacaaaaa |
6809467 |
T |
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| Q |
315 |
tgttgttcttttggccatagaaaataggcaacctcatgtatacagtttgttaaataggaggagtataatcaaggaaactgcatttcgtcaagttgatatc |
414 |
Q |
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| T |
6809466 |
tgttgttcttttggccatagaaaataggcaacctcatgtatacagtttgttaaataagaggagtataatcaaggaaactgcatttcgtcaagttgatatc |
6809367 |
T |
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| Q |
415 |
aatggtaacagtgcattgcacct |
437 |
Q |
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| T |
6809366 |
aatggtaacagtgcattgcacct |
6809344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 405
Target Start/End: Complemental strand, 6817895 - 6817505
Alignment:
| Q |
15 |
ggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagcgcgcttctttatacaagtatgattttaca |
114 |
Q |
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| T |
6817895 |
ggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagtgcgcttctttatacaagtatgattttaca |
6817796 |
T |
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| Q |
115 |
ggaccaagtcctcatgttgaagatcatggtggtgataacatgggtaaaataaagagctatacagaaaatgaggctattgagaaaaggagaacagtgtcac |
214 |
Q |
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| T |
6817795 |
ggaccaagtcctcatgttgaagatcatggtggtgataacatggataaaataaagagcaatacagaaaatgaggctattgcgaaaaggagaacagtgtcac |
6817696 |
T |
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| Q |
215 |
ctattttaattgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggacagtcagaacaaaaa |
314 |
Q |
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| T |
6817695 |
caattttaatcgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggtcagtcagaacaaaaa |
6817596 |
T |
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| Q |
315 |
tgttgttcttttggccatagaaaataggcaacctcatgtatacagtttgttaaataggaggagtataatcaaggaaactgcatttcgtcaa |
405 |
Q |
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| T |
6817595 |
tgttgttcttttggccatagagaataggcaacctcatgtatatagtttgttaaatgagaggagaataatcaaggagactgcatttcgtcaa |
6817505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 6832409 - 6831990
Alignment:
| Q |
15 |
ggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagcgcgcttctttatacaagtatgattttaca |
114 |
Q |
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| T |
6832409 |
ggtagagaaaatccaaaggaagaaggaaaaacacattcgggctaagcaagtgatgaatgaactgattcagcacgcttctttatacaagtatgattttaca |
6832310 |
T |
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| Q |
115 |
ggaccaagtcctcatgttgaagatcatggtggtgataacatgggtaaaataaagagctatacagaaaatgaggctattgagaaaaggagaacagtgtcac |
214 |
Q |
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||||||||||||| ||||||||| | |||||||| | |||| | ||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||| |
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| T |
6832309 |
ggaccaagtcctcgtgttgaagaacttggtggtggtgacatagataaaataaagagcaatacagaaaatgaagttattgagaaaaggagaatggtgtcac |
6832210 |
T |
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| Q |
215 |
ctattttaattgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggacagtcagaacaaaaa |
314 |
Q |
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| T |
6832209 |
caattttaattgcagcaaagatgggagtgactgaaatgattgaaaatattctagacatgtaccctgtggctattcacgatgtggacagtcagaacaagaa |
6832110 |
T |
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| Q |
315 |
tgttgttcttttggccatagaaaataggcaacctcatgtatacagtttgttaaataggaggagtataatcaaggaaactgcatttcgtcaagttgatatc |
414 |
Q |
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| T |
6832109 |
tgttgttcttttggccatagagaataggcaacctcatgtatacagtttgttaaataagaggagtgtaatcaaagagactgcatttcgtcaagttgatatc |
6832010 |
T |
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| Q |
415 |
aatggtaacagtgcattgca |
434 |
Q |
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|||||||||||||||||||| |
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| T |
6832009 |
aatggtaacagtgcattgca |
6831990 |
T |
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