View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_30 (Length: 433)

Name: NF16177_high_30
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_30
NF16177_high_30
[»] chr4 (5 HSPs)
chr4 (92-418)||(2565927-2566235)
chr4 (197-253)||(43429325-43429381)
chr4 (197-253)||(21438386-21438442)
chr4 (197-253)||(51206853-51206909)
chr4 (276-315)||(1757358-1757397)
[»] chr7 (4 HSPs)
chr7 (264-370)||(24007376-24007482)
chr7 (278-315)||(7792353-7792390)
chr7 (262-315)||(33618193-33618246)
chr7 (280-312)||(38599738-38599770)
[»] chr2 (5 HSPs)
chr2 (197-253)||(6256953-6257009)
chr2 (197-253)||(12328773-12328829)
chr2 (262-315)||(43871378-43871431)
chr2 (281-315)||(9171577-9171611)
chr2 (263-315)||(42554034-42554086)
[»] chr1 (2 HSPs)
chr1 (197-253)||(4437186-4437242)
chr1 (197-253)||(25668984-25669040)
[»] chr3 (3 HSPs)
chr3 (262-315)||(51390518-51390571)
chr3 (197-253)||(54523246-54523302)
chr3 (278-352)||(34848184-34848258)
[»] chr5 (1 HSPs)
chr5 (262-315)||(25595424-25595477)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 92 - 418
Target Start/End: Original strand, 2565927 - 2566235
Alignment:
Q  92 tatctaacaaaactatcaaagcattgatttaagttactgatacaaaacatagagtgccacttgaattaagaaactagactttcaaatcatatcataaatt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2565927 tatctaacaaaactatcaaagcattgatttaagttactgatacaaaacatagagtgccacttgaattaagaaactagactttcaaatcatatcataaatt 2566026  T
Q  192 catggttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattctaattaaaactacatcatgttgatgttgattacatcgtt 291  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2566027 catgcttctatgttattcatcttgtttgtctaacttccttcatccgccttctacgtcattctaattaaaactacatcatgttaatgttgattacatcgtt 2566126  T
Q  292 attgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttcaatagcctgtttatatcatatgtaaatgatggacaatttt 391  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||                  ||||||| |||||||  |||||||||||||||||    
T  2566127 attgtttcgttactttattatcctcattactatcactgcttcatacat------------------ctgtttacatcatatacaaatgatggacaatttt 2566208  T
Q  392 tagatggattgatcaaactgtattctt 418  Q
    |||||||||||||||||||||||||||    
T  2566209 tagatggattgatcaaactgtattctt 2566235  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 43429381 - 43429325
Alignment:
Q  197 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 253  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  43429381 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgtcattct 43429325  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 21438386 - 21438442
Alignment:
Q  197 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 253  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||||    
T  21438386 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattct 21438442  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 51206909 - 51206853
Alignment:
Q  197 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 253  Q
    |||||| |||||||||| |||||||||||||||||||||| | ||||| | ||||||    
T  51206909 ttctatgttattcatctggtttgtctaacttccttcatcctttttctatgccattct 51206853  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 1757358 - 1757397
Alignment:
Q  276 tgttgattacatcgttattgttccgttactttattatcct 315  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  1757358 tgttgattacatcgttattgtttcgttagtttattatcct 1757397  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 370
Target Start/End: Original strand, 24007376 - 24007482
Alignment:
Q  264 acatcatgttgatgttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttcaatagcctgttt 363  Q
    ||||| ||||| | ||||||||||| |||||||| | ||| ||||||||||| ||| |||||||||||||||| ||||||| |||||| | | |||||||    
T  24007376 acatcgtgttgttattgattacatctttattgtttcattattttattatccttattgctatcactgcttcatatatcgttattgtttcgacaacctgttt 24007475  T
Q  364 atatcat 370  Q
    | |||||    
T  24007476 acatcat 24007482  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 7792353 - 7792390
Alignment:
Q  278 ttgattacatcgttattgttccgttactttattatcct 315  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7792353 ttgattacatcgttattgtttcgttactttattatcct 7792390  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 33618246 - 33618193
Alignment:
Q  262 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 315  Q
    ||||||| ||||| | | |||||||||||||||||| | |||||||||||||||    
T  33618246 ctacatcgtgttgttatcgattacatcgttattgtttctttactttattatcct 33618193  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 38599770 - 38599738
Alignment:
Q  280 gattacatcgttattgttccgttactttattat 312  Q
    |||||||||||||||||| ||||||||||||||    
T  38599770 gattacatcgttattgtttcgttactttattat 38599738  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 6256953 - 6257009
Alignment:
Q  197 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 253  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||||    
T  6256953 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattct 6257009  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 12328773 - 12328829
Alignment:
Q  197 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 253  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  12328773 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 12328829  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 43871378 - 43871431
Alignment:
Q  262 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 315  Q
    ||||||||||||| | | |||||||||||||||||| |||| ||||||||||||    
T  43871378 ctacatcatgttgttatagattacatcgttattgtttcgttgctttattatcct 43871431  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 9171577 - 9171611
Alignment:
Q  281 attacatcgttattgttccgttactttattatcct 315  Q
    ||||||||||||||||| |||||||||||||||||    
T  9171577 attacatcgttattgtttcgttactttattatcct 9171611  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 42554034 - 42554086
Alignment:
Q  263 tacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 315  Q
    |||||||||||| | | |||||||||||||||||  ||||||| |||||||||    
T  42554034 tacatcatgttgttatcgattacatcgttattgtctcgttactctattatcct 42554086  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 4437242 - 4437186
Alignment:
Q  197 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 253  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  4437242 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 4437186  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 25669040 - 25668984
Alignment:
Q  197 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 253  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  25669040 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 25668984  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 51390571 - 51390518
Alignment:
Q  262 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 315  Q
    ||||||||||||| | | ||||||||||| |||||| |||||||||||||||||    
T  51390571 ctacatcatgttgttatcgattacatcgtcattgtttcgttactttattatcct 51390518  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 54523302 - 54523246
Alignment:
Q  197 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 253  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||||| | ||||||    
T  54523302 ttctatgttattcatctggtttgtctaactttcttcatccttcttctatgccattct 54523246  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 34848258 - 34848184
Alignment:
Q  278 ttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttca 352  Q
    ||||||||||  ||||||||  |||||||||||| ||| |||  ||||||| |||||||||| |||| |||||||    
T  34848258 ttgattacattattattgttttgttactttattaaccttattgttatcactccttcatacattgttactgtttca 34848184  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 25595424 - 25595477
Alignment:
Q  262 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 315  Q
    ||||||| ||||||| | |||||||||||||||||| | ||||| |||||||||    
T  25595424 ctacatcgtgttgatatcgattacatcgttattgtttctttactctattatcct 25595477  T

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