View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_32 (Length: 426)
Name: NF16177_high_32
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 47235038 - 47234624
Alignment:
| Q |
1 |
acagttatatatacatgatctaattaaacacacatattaataatactaataactttttgtaaataaaatagatctatcctagctaggcttctttgatttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47235038 |
acagttatatatacatgaactaattaaacacacatattaata---ctaataactttttgtaaataaaatagatctatcctagctaggcttctttgatttc |
47234942 |
T |
|
| Q |
101 |
cggatcctaacctagctagggtttctggaaaattattcttttttgagaaaatcgaagtatcttggtttggctttggggagctacacaagctagttagtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47234941 |
tggatcctaacctagctagggtttctggaaaattattcttttttgagaaaatcgaagtatcttggtttggctttggggagctacacaagctagttagtta |
47234842 |
T |
|
| Q |
201 |
ggattttgaacttcaaagcatttttgtctgtcatttcatttctacctgatgagctagccctagctagttaggcagtagctgcatacaccacctgtaagta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47234841 |
ggattttgaacttcaaagcatttttgtctgtcatttcatttctacctgatgagctagccctagctagttaggcagtagctgcatacaccgcctgtaagta |
47234742 |
T |
|
| Q |
301 |
agccgccataaaaacacaaacctattttcctttttcatagactcgtcagaagttgtcctaacccaccaaaccaaaccatactgaaaatgttttgcatata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
47234741 |
agccgccataaaaacacaaacctattttcctttttcatagactcgtcagaaactgtcctaacccaccaagccaaaccatactgaaaatgttttgcttata |
47234642 |
T |
|
| Q |
401 |
aagacttttgcctttgct |
418 |
Q |
| |
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||||||||| ||||||| |
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| T |
47234641 |
aagacttttaactttgct |
47234624 |
T |
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