View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_38 (Length: 412)

Name: NF16177_high_38
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_38
NF16177_high_38
[»] chr8 (4 HSPs)
chr8 (57-400)||(35739394-35739738)
chr8 (18-57)||(35734606-35734645)
chr8 (140-300)||(37081028-37081194)
chr8 (323-400)||(37080830-37080909)
[»] chr1 (2 HSPs)
chr1 (321-394)||(3722554-3722628)
chr1 (339-383)||(32953593-32953637)
[»] chr6 (3 HSPs)
chr6 (101-207)||(29522046-29522152)
chr6 (309-400)||(29521797-29521886)
chr6 (251-306)||(29521968-29522023)
[»] scaffold0011 (1 HSPs)
scaffold0011 (325-382)||(228921-228978)
[»] chr2 (2 HSPs)
chr2 (317-400)||(36033648-36033728)
chr2 (95-202)||(36033306-36033414)
[»] chr5 (3 HSPs)
chr5 (317-364)||(27983688-27983733)
chr5 (251-306)||(41968787-41968842)
chr5 (351-398)||(41968925-41968972)
[»] chr7 (1 HSPs)
chr7 (337-400)||(7805664-7805727)


Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 57 - 400
Target Start/End: Original strand, 35739394 - 35739738
Alignment:
Q  57 acttgggattaagaaaaaagattttaaaaaatggggcattaccacgaaaacggccattacaaaacggtataggcaagcgatgt-accgtttttgcccgat 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35739394 acttgggattaagaaaaaagattttaaaaaatggggcattaccacgaaaacggccattacaaaacggtataggcaagcgatgttaccgtttttgcccgat 35739493  T
Q  156 ttaatggagggaaggaaaatcacacgaaaacgccgtgacgtaacgccgttacgaccgcaaccattacagctgcgaaaaaagaaggcggtttctagatttt 255  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  35739494 ttaatggtgggaaggaaaatcacacgaaaacgccgtgatgtaacgccgttacgaccgcgaccattacaactgcgaaaaaagaagacggtttctagatttt 35739593  T
Q  256 ggccatcacctcttctttctttacggttcattactccttcaattcttagatagaaaaagattgtctttgtgtgaatatggttgtgtgagtttggacttta 355  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35739594 ggtcatcacctcttctttctttacggttcattactccttcaattcttagatagaaaaagattgtctttgtgtgaatatggttgtgtgagtttggacttta 35739693  T
Q  356 gagatgagattttttatgtttatgaatttgtggttccatgcttca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35739694 gagatgagattttttatgtttatgaatttgtggttccatgcttca 35739738  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 35734606 - 35734645
Alignment:
Q  18 aatataataatcaatataagagaaggggcatgtcttatca 57  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35734606 aatataataatcaatataagagaaggggcatgtcttatca 35734645  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 300
Target Start/End: Complemental strand, 37081194 - 37081028
Alignment:
Q  140 accgtttttgcccgatttaat-ggagggaaggaaaatcacacgaaaacgccgtgacgtaacgccgttacgaccgcaac----cattacagctgcgaaaaa 234  Q
    |||||||||||| | |||||  || |||||| ||||||||| |||| |||||| |||||||||||||||  |||| ||    | ||| |||||||||||     
T  37081194 accgtttttgcctgttttaaacggtgggaagaaaaatcacatgaaatcgccgttacgtaacgccgttacagccgcgaccgatcgttatagctgcgaaaac 37081095  T
Q  235 agaaggcggtttctagattttggccatcacctcttctttcttta-cggttcattactccttcaattc 300  Q
    ||||  | ||||| |||| |||| |||||| || ||||| ||||  | |||||||||||||||||||    
T  37081094 agaacacagtttccagatcttggtcatcacatcctctttatttatagcttcattactccttcaattc 37081028  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 37080909 - 37080830
Alignment:
Q  323 tgtgtgaatatggttgtgtgag--tttggactttagagatgagattttttatgtttatgaatttgtggttccatgcttca 400  Q
    ||||||||||||||| || |||  ||  |||||||||||||||||| ||  ||||||||||||||||||| | |||||||    
T  37080909 tgtgtgaatatggttctgagagagttcagactttagagatgagattattggtgtttatgaatttgtggttgcttgcttca 37080830  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 3722628 - 3722554
Alignment:
Q  321 tttgtgtgaatatggttgtgtgagtttggactttagagatgagatt-ttttatgtttatgaatttgtggttccat 394  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  3722628 tttgtgtgaatatggttgtgttagtttggactttagagatgagatttttttatgtttatgaattagtggttccat 3722554  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 32953593 - 32953637
Alignment:
Q  339 tgtgagtttggactttagagatgagattttttatgtttatgaatt 383  Q
    |||||||| ||||| ||||||||||||||||  ||||||||||||    
T  32953593 tgtgagttcggactatagagatgagatttttggtgtttatgaatt 32953637  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 29522152 - 29522046
Alignment:
Q  101 cgaaaacggccattacaaaacggtataggcaagcgatg-taccgtttttgcccgatttaatggagggaaggaaaatcacacgaaaacgccgtgacgtaac 199  Q
    ||||||||| | ||| ||||| |||||||||||||| | ||||||||||||||||||||| || |||||| |||||||||| ||||| | ||||||||||    
T  29522152 cgaaaacggacgttataaaaccgtataggcaagcgacgataccgtttttgcccgatttaacggtgggaagtaaaatcacac-aaaacactgtgacgtaac 29522054  T
Q  200 gccgttac 207  Q
    ||||||||    
T  29522053 gccgttac 29522046  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 29521886 - 29521797
Alignment:
Q  309 aaaaagattgtctttgtgtgaatatggttgtgtgagtttggactttagagatgagattttttatgtttatgaatttgtggttccatgcttca 400  Q
    ||||| ||||||||||| |||| |||||||||  || ||||  |||||||||||||||||| |||||||||||||  ||||||| |||||||    
T  29521886 aaaaaaattgtctttgtatgaagatggttgtg--agcttgggttttagagatgagatttttcatgtttatgaattcatggttccttgcttca 29521797  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 29522023 - 29521968
Alignment:
Q  251 attttggccatcacctcttctttctttacggttcattactccttcaattcttagat 306  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  29522023 attttggtcatcacctcttctttatttacagttcattactccttcaattcctagat 29521968  T

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Target: scaffold0011 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 228978 - 228921
Alignment:
Q  325 tgtgaatatggttgtgtgagtttggactttagagatgagattttttatgtttatgaat 382  Q
    |||||||||||||||||||||| |||||||||||||||||| |||  |||||||||||    
T  228978 tgtgaatatggttgtgtgagttcggactttagagatgagatatttggtgtttatgaat 228921  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 400
Target Start/End: Original strand, 36033648 - 36033728
Alignment:
Q  317 tgtctttgtgtgaatatggttgtgtgagtttggactttagagatgagattttttatgtttatgaatttgtggttccatgcttca 400  Q
    ||||||||||||||||||||  |||||||| ||||| ||||||||||| ||||| |||||||||||| |||||| | |||||||    
T  36033648 tgtctttgtgtgaatatggt--tgtgagttcggactatagagatgaga-tttttgtgtttatgaattcgtggttgcttgcttca 36033728  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 202
Target Start/End: Original strand, 36033306 - 36033414
Alignment:
Q  95 ttaccacgaaaacggccattacaaaacggtataggcaagcgatg-taccgtttttgcccgatttaatggagggaaggaaaatcacacgaaaacgccgtga 193  Q
    ||||| ||| |||||| |||||||||||||||||||| |||  | ||| ||| ||| ||| |||||  | |||||| ||||||||  |||||||| || |    
T  36033306 ttaccgcgataacggctattacaaaacggtataggcaggcggcgatacagttgttggccgttttaaccgtgggaagaaaaatcacgggaaaacgctgtta 36033405  T
Q  194 cgtaacgcc 202  Q
    |||||||||    
T  36033406 cgtaacgcc 36033414  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 27983733 - 27983688
Alignment:
Q  317 tgtctttgtgtgaatatggttgtgtgagtttggactttagagatgaga 364  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27983733 tgtctttgtgtgaatatggttgtg--agtttggactttagagatgaga 27983688  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 41968787 - 41968842
Alignment:
Q  251 attttggccatcacctcttctttctttacggttcattactccttcaattcttagat 306  Q
    ||||||| ||||||||||||||| ||||| ||||||||||  ||||||||||||||    
T  41968787 attttggtcatcacctcttctttatttacagttcattactagttcaattcttagat 41968842  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 41968925 - 41968972
Alignment:
Q  351 ctttagagatgagattttttatgtttatgaatttgtggttccatgctt 398  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  41968925 ctttatagatgagattttttaagtttatgaattcgtggttccatgctt 41968972  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 7805727 - 7805664
Alignment:
Q  337 tgtgtgagtttggactttagagatgagattttttatgtttatgaatttgtggttccatgcttca 400  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||| || ||| | |||||||    
T  7805727 tgtgtgagtttggactttagagatgggatttttggtgtttatgaattcgtagttgcttgcttca 7805664  T

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