View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_40 (Length: 404)
Name: NF16177_high_40
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 1837352 - 1837735
Alignment:
| Q |
9 |
gaagaatatgaatgggaagacatacaacaacacagtgattctctatgggatccttaacttggtacgtaacatacgtaacgtataacgtatgctgatcata |
108 |
Q |
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| T |
1837352 |
gaagaaaatgaatgggaagacatacaacaacacagtgattctctatgggatccttaacttggtacgtaacatacgtaacgtataacgtatgctgatcata |
1837451 |
T |
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| Q |
109 |
taattaatatacctatacatcatattttcgtattttagtatttaaatgttaattggattttatacttatacatttacgtatttaatgtataacgtactaa |
208 |
Q |
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| T |
1837452 |
taattaatatacctatacatcatattttcgtattttagtatttaaatgttaattggattttctacttatacatttacgtatttaatgtataatgtactaa |
1837551 |
T |
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| Q |
209 |
tagttataactattgaattaattaag---gttgatataattagaagggttggatagtgtgacacaaaatccacttgactcttgtcttgttttatgaaaat |
305 |
Q |
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| T |
1837552 |
tagttataactattcaattaattaaggttgttgatataaatagaagggttggatagtgtgacacaaaatccacttgactcttgtcttgttttatgaaaat |
1837651 |
T |
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| Q |
306 |
tagtagcaagggatcaaaggaatgagtttggttgtattaattttctttctttgaggatgaaagaaacaagttaaggacggtggt |
389 |
Q |
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| T |
1837652 |
tagtagcaagggatcaaaggaatgagtttggttatattaattttctttctttgaggatgaaagaaacaagttaaggacggtggt |
1837735 |
T |
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