View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_high_43 (Length: 392)
Name: NF16177_high_43
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_43 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 43482956 - 43483315
Alignment:
| Q |
18 |
agaaggtacgtgacattttcacccggttttagttattgaaagttgcatggatttagtgtgtgtttgatgaataatgtattcgataaaattacggtgatgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43482956 |
agaaggtacgtgacattttcacccggttttagttattgaaagttgcatggattt-----------gatgaataatgtattcgataaaattacggggatgc |
43483044 |
T |
|
| Q |
118 |
tgtgaatttgttgaagttcgatctaaaatgtagtttttactaaaatcatgtggctggctgtgattctgacgagtttagagtcaatccaatcatacaatta |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43483045 |
tgtgaatttgttgaagttt----taaaatgtagtttttgctaaaatcatgtggctggctgtgattctgacgagtttagagtcaatccaatcatacagtta |
43483140 |
T |
|
| Q |
218 |
agtttaaagaaaataaatgagtttgtcagaccaaagattttgatccaataactaatttttaacctatgatcctgattattttttgagaggaatatcatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43483141 |
agtttaaagaaaataaatgagtttgtcagaccaaagattttgatccaataactaatttttaacctatgatccagattattttttgagaggaatatcatcc |
43483240 |
T |
|
| Q |
318 |
atagattataagcacagttgatatgtattatctgatttccaaaaataagcatggcttgaaatctcaatcatggct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43483241 |
atagattataagcacagttgatatgtattatctgatttccaaaaataagcatggcttgaaatctcaatcatggct |
43483315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University