View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_48 (Length: 362)
Name: NF16177_high_48
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 45161818 - 45161492
Alignment:
| Q |
16 |
tactagtgtagcaagctcaacaaatgcaatacgacgacatatcattgtccagatgttgacgactccataatatcattgttttctcctccaccttctacta |
115 |
Q |
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| T |
45161818 |
tactagtgtagcaagctcaacaaatgcaatacgac---atatcattgtccagatgttgacgactccataatatcattgttttctcctccaccttctacta |
45161722 |
T |
|
| Q |
116 |
aaggttcctggttctttccaacattctcctgcaagtgctttacccacttccatgttgctgggtcttcctgaaaataatatcaaataatgtaaacagactn |
215 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45161721 |
aaggttcctggttcttttcaacattctcctgcaagtgctttacccacttccatgttgctgggtcttcctgaaaataatatcaaataatgtaaacagacta |
45161622 |
T |
|
| Q |
216 |
nnnnnnntgagaataaactctttctaaaggcaaaattgagtatttcaagagactaaattcttctagttattatcctagagttataagatgcattataacc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45161621 |
aaaaaaatgagaataaactctttctaaaggcaaaattgagtatttcaagagactaaattcttctagttattatcctagagttataagatgcattgtaacc |
45161522 |
T |
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| Q |
316 |
ttaacattgatttagtatgaacattgttga |
345 |
Q |
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||||||||||||||||||| |||||||||| |
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| T |
45161521 |
ttaacattgatttagtatggacattgttga |
45161492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 24126773 - 24126955
Alignment:
| Q |
16 |
tactagtgtagcaagctcaacaaatgcaatacgacgacatatcattgtccagatgttgacgactccataatatcattgttttctcctccaccttctacta |
115 |
Q |
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|||||||||||||||| || |||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
24126773 |
tactagtgtagcaagcccagtaaatacaatacga---catatcattgtcccgatgttgacgactccacaatatcattgttttctcctccacctgctacta |
24126869 |
T |
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| Q |
116 |
aaggttcctggttctttccaacattctcctgcaagtgctttacccacttccatgttgctgggtcttcctgaaaataatatcaaata |
201 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||| ||| |||| |||||| ||||||||||||||||||||| |
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| T |
24126870 |
aaggttcctggttctttctaacattctcctgcaagtgttttacccactcccaagttgttgggtcctcctgaaaataatatcaaata |
24126955 |
T |
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