View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_53 (Length: 352)
Name: NF16177_high_53
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_53 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 42640476 - 42640814
Alignment:
| Q |
13 |
aatatacaattcggtgttgacaaaaattacacttagagcttctaaaaaatcagggtgtcaacgtgatattgtcaaactcatagccagtccaaacatgtat |
112 |
Q |
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| T |
42640476 |
aatatccaattcgattttgataaaaattacacttagagcttctaaaaaaccacagtatcaacgtgatattgtcaaactcatagtctgtccaaacatatat |
42640575 |
T |
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| Q |
113 |
tatctgttacggatacaagtacaattaagtgattcaagttgatcggttggaattaataatgtcttaaatgttttgatttatttattggtagaaacccctg |
212 |
Q |
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| T |
42640576 |
gatctgttacggatacaagtacaattaagtgattcaagttgatcggttggaattattaatgtcttgaatgttttgatt-atttattggtagaaacccctg |
42640674 |
T |
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| Q |
213 |
aaaataaattgtgacaagggtaacttaggtgtccttacaaatcaatttgcggaggtcaaaatctctgtaaattagtttagtcaatgcaaacatatactat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42640675 |
aaaataaattgtgacaagggtaacttaggtgtccttacgaatcaatttgtggaggtcaaaatctctgtaaattagtttagtcaatgcaaacatatactat |
42640774 |
T |
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| Q |
313 |
gtatgtgttgcgaatacaagtagtggattcgactggaatt |
352 |
Q |
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| T |
42640775 |
gtatgtgttgcgaatacaagtagtggaatcgactggaatt |
42640814 |
T |
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