View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_6 (Length: 598)
Name: NF16177_high_6
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 49293900 - 49293483
Alignment:
| Q |
1 |
attgttgcatgcttcagcgacggaagttgatatcatgaatttgagcttgctggtaatgataatgattattgattaaaatcagtgatatgattaaaattaa |
100 |
Q |
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| T |
49293900 |
attgttgcatgcttcagcgacggaagttgatatcatgaatttgagcttgctggtaatgataataattattgattaaaatcagtgatatgattaaaattaa |
49293801 |
T |
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| Q |
101 |
attgaaaaaggggaagtttgtggtacctgtaattggtatctggagagtctttgaagatgaatccagtatcgcagattctgcttcgaagcaagttcaacgc |
200 |
Q |
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| T |
49293800 |
attgaaaagggggaagtttgtggtacctgtaattggtatctgaagagtctttgaagatgaatccagtatcgcagattctgcttcgaagcaagttcaacgc |
49293701 |
T |
|
| Q |
201 |
attctctccctccattgatggtgatacaaggttatttggcgggaatggaataatacccacgcctatttatttaattcagacttaattcattaatcaaccg |
300 |
Q |
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| T |
49293700 |
attctctccctccattgatggtgatacaaggttatttggcgggaatggaataatacccacgcctatttatttaattcagacttaattcattaatcaaccg |
49293601 |
T |
|
| Q |
301 |
atccttttac---ttcatttttcttttcttcttcaaaacggtcttagaatttgaaatactagtatggacacccgtgtcatcttacttgaatgagggaata |
397 |
Q |
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| T |
49293600 |
atccttttaccttttttttttttttttcttcttcaaaacggtcttagaatttgaaatactactatggacacccgtgacatcttacttgaatgagagaata |
49293501 |
T |
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| Q |
398 |
ttgtgatgtttccgatgt |
415 |
Q |
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| T |
49293500 |
ttatgatgtttccgatgt |
49293483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 488 - 581
Target Start/End: Complemental strand, 49293410 - 49293317
Alignment:
| Q |
488 |
gcttaagccttcaaatccatgatgaaaatgtggtgtcattctgattgctatttctccaatgtatccatcgacaccggtatggactcccccaaaa |
581 |
Q |
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| T |
49293410 |
gcttaagccttcaaatccatgatgaaaatgtggtgtcattctgattgctatttctccaatgtatccatccacaccggtatcgactccctcaaaa |
49293317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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