View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_61 (Length: 335)
Name: NF16177_high_61
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_61 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 49871740 - 49871423
Alignment:
| Q |
18 |
atcaatggtctttcaggatttgtgaaagatcttaacttgagctcttttgcaagtgttttgaataataataggaagcttttgtctgaagatggtttgccat |
117 |
Q |
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| T |
49871740 |
atcaatggtctttcaggatttgtgaaagatcttaacttgagctcttttgcaagtgctttgaataataataggaagcttttgtctgaagatggtttaccat |
49871641 |
T |
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| Q |
118 |
catgggtttctcaaagtcaaaggaaacttcttgcggctcctcagaacgttaagcctaacattgttgttgcacaagatggtagtggtcaatttaagacttt |
217 |
Q |
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| T |
49871640 |
catgggtttctcaaagtcaaaggaaacttcttgcggctcctcagaacgttaagcctaacgttgttgttgcacaagatggtagtggtcaatttaagacttt |
49871541 |
T |
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| Q |
218 |
gactgaggcacttgcaactgttcccaagaagaacaaagttccttttgttattcatgttaaggctggtatctataaggagtatgttgctctggataaccat |
317 |
Q |
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| T |
49871540 |
gactgaggcacttgcaactgttcccaagaagaacaaagttccttttgttattcatgttaaggctggtatctataaggagtatgttgctctggataaccat |
49871441 |
T |
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| Q |
318 |
agggaccatgttactatt |
335 |
Q |
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| T |
49871440 |
agggaccatgttactatt |
49871423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 49865809 - 49865492
Alignment:
| Q |
18 |
atcaatggtctttcaggatttgtgaaagatcttaacttgagctcttttgcaagtgttttgaataataataggaagcttttgtctgaagatggtttgccat |
117 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49865809 |
atcaatggactttcaggatttgtaaaagatcttaacttgagctctttaacaagtgttttgaataataataggaagcatttgtctgaagatggtttgccat |
49865710 |
T |
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| Q |
118 |
catgggtttctcaaagtcaaaggaaacttcttgcggctcctcagaacgttaagcctaacattgttgttgcacaagatggtagtggtcaatttaagacttt |
217 |
Q |
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| T |
49865709 |
catgggtttctcaaagccaaaggaaacttctcgcggctcctgagaacgttaagcctaatgctgttgttgcacaagatggtagtggtcaatttaagacatt |
49865610 |
T |
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| Q |
218 |
gactgaggcacttgcaactgttcccaagaagaacaaagttccttttgttattcatgttaaggctggtatctataaggagtatgttgctctggataaccat |
317 |
Q |
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| T |
49865609 |
gactgaggcacttgcactagttcccaagaaaaaccaagttccttttgttattcatgttaaggctggtatctataaggagtatgtttctgtggataaagat |
49865510 |
T |
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| Q |
318 |
agggaccatgttactatt |
335 |
Q |
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| T |
49865509 |
agggaccatgttactatt |
49865492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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