View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_66 (Length: 325)
Name: NF16177_high_66
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_66 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 15737361 - 15737112
Alignment:
| Q |
1 |
atgtctaccatggatatagatcagtttacaaagtaaagtgtctggaagttggtgataagtttaacctttctttctacaaaatagtttatgaaaatcaaca |
100 |
Q |
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| T |
15737361 |
atgtctactatggatatagatcagtttgcaaagtaaagtggttggaagctggtgataagtttaacttttctttcgacaaaatactttatgaaaatcaaca |
15737262 |
T |
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| Q |
101 |
tgactttttatttatatgccttaattagatcgcaatgaaaagccattgattagtcttatgaaacatttgaaagaagttaaattttcacaactaaacgttt |
200 |
Q |
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| T |
15737261 |
tggctttttgtttatatgccttaatcagatcacaaggagaagccactaattagtcttatgaaacatttgaaataaattaaattgtcgcaactaaaagttt |
15737162 |
T |
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| Q |
201 |
cttacaagtcaattcaataaggttgaataagtggcaactttgattctatt |
250 |
Q |
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| T |
15737161 |
cttacaagtcaattctataacgttgaataagaggcaactttgaatctatt |
15737112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 15815180 - 15815121
Alignment:
| Q |
6 |
taccatggatatagatcagtttacaaagtaaagtgtctggaagttggtgataagtttaac |
65 |
Q |
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| T |
15815180 |
taccatggatatagatcagtttgtaaagtaaagtggctgtaagctggtgataagtttaac |
15815121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 15831496 - 15831437
Alignment:
| Q |
6 |
taccatggatatagatcagtttacaaagtaaagtgtctggaagttggtgataagtttaac |
65 |
Q |
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| T |
15831496 |
taccatggatatagatcagtttgtaaagtaaagtggctgtaagctggtgataagtttaac |
15831437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 25286664 - 25286527
Alignment:
| Q |
50 |
tggtgataagtttaacctttctttctacaaaatagttt-atgaaaatcaacatgactttttatttatatgccttaattagatcgcaatgaaaagccattg |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
25286664 |
tggtgataagtttaacctttctttctacaaaatagttttatgaaaatcaacatgactttttgtttatatgccttaattagatcacaatgaaaagccattg |
25286565 |
T |
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| Q |
149 |
attagtcttatgaaacatttgaaagaagttaaattttc |
186 |
Q |
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| T |
25286564 |
attagtcttatgaaacatttgaaagaagttaaattttc |
25286527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 25286248 - 25286118
Alignment:
| Q |
181 |
attttcacaactaaacgtttcttacaagtcaattcaataaggttgaataagtggcaactttgattctattaagttgcattgttgttatttgttctaaatg |
280 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |
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| T |
25286248 |
attttcacaactaaacgtttcttacaagtcaattctataaggttgaataagtggcaactttgactctattcagttgcattgttgttatttgttctaactg |
25286149 |
T |
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| Q |
281 |
tgatttcaagtggaaattcttatcacatata |
311 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25286148 |
tgatttcaagtggaaattcttatcacatata |
25286118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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