View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_69 (Length: 320)
Name: NF16177_high_69
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 37628532 - 37628272
Alignment:
| Q |
1 |
aaattgtgaaactctgaaattggaggggtgaacttccttatgtatatcaaatttgtttggattacgtaatccgaatgacatgttggtcatttttgcagga |
100 |
Q |
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| T |
37628532 |
aaattgtgaaactctgtaatgggaggggtgaacttccttatgtatatcaaatttgtttggattacgtaatccgaatgacatgttggtcatttttgcagga |
37628433 |
T |
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| Q |
101 |
cgtgtgagtatggcttagggtgggaaaaataaaagtccaannnnnnnnatacaagtgtgctagggcaccaacaccctatgcatatctttactcaaacact |
200 |
Q |
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| T |
37628432 |
cgtgtgagtatggcttagggtgggaaaaataaaagtccaattttttttatacaagtgtgttagggcaccaacaccctatgcatatctttactcaaacact |
37628333 |
T |
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| Q |
201 |
ctaaacatgcaacgtttagtgtgaatgccctcttatcattgaagagtgtggaccaaaccag |
261 |
Q |
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| T |
37628332 |
ctaaacatgcatcgtttagcgtgaatgccctcttatcattgaagagtgtggaccaaaccag |
37628272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 17377900 - 17377835
Alignment:
| Q |
67 |
taatccgaatgacatgttggtcatttttgcaggacgtgtgagtatggcttagggtgggaaaaataa |
132 |
Q |
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| T |
17377900 |
taatccgaatggcatattgatcatttttgcagagcgcgtgagtatggcatagggtgagaaaaataa |
17377835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 37628251 - 37628222
Alignment:
| Q |
277 |
gttatccctaaacctcctcggctcctcccc |
306 |
Q |
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| T |
37628251 |
gttatccctaaacctcctcggctcctcccc |
37628222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 17222850 - 17222972
Alignment:
| Q |
6 |
gtgaaactctgaaattggaggggtgaacttccttatgtatatcaaatttgtttggattacgtaatccgaatgacatgttggtcatttttgcaggacgtgt |
105 |
Q |
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|||||||| | |||| |||||||||||||||||| | || || || |||| ||||||||||||| ||||||||||||||||||||||||||| | | |
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| T |
17222850 |
gtgaaactgtaaaatgggaggggtgaacttccttttatacattgaagttgtccggattacgtaatctgaatgacatgttggtcatttttgcagggcacat |
17222949 |
T |
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| Q |
106 |
gagtatggcttagggtgggaaaa |
128 |
Q |
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| T |
17222950 |
gagtatggcatagggtgggaaaa |
17222972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 13120768 - 13120700
Alignment:
| Q |
59 |
ggattacgtaatccgaatgacatgttggtcatttttgcaggacgtgtgagtatggcttagggtgggaaaa |
128 |
Q |
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| T |
13120768 |
ggattacgtaatccgaagggcatgttggtcatttttgcaaggcg-gtgagtatggcatagggtgggaaaa |
13120700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 28243418 - 28243350
Alignment:
| Q |
5 |
tgtgaaactctgaaattggaggggtgaacttccttatgtatatcaaatttgtttggattacgtaatccg |
73 |
Q |
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| T |
28243418 |
tgtgaaactgtaaaatgggaggggtgaacttccttttatatatcgaagttctctggattacgtaatccg |
28243350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 28243328 - 28243250
Alignment:
| Q |
59 |
ggattacgtaatccgaatgacatgttggtcatttttgcaggacgtgtgagtatggcttagggtgggaaaaataaaagtc |
137 |
Q |
| |
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||||||||||||||||| | |||||||||||||||| |||| | ||| |||| | |||| |||||||| |||||||| |
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| T |
28243328 |
ggattacgtaatccgaaaggcatgttggtcatttttacagggtgcgtgggtataacataggttgggaaaagtaaaagtc |
28243250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 13312272 - 13312352
Alignment:
| Q |
56 |
tttggattacgtaatccgaatgacatgttggtcatttttgcaggacgtgtgagtatggcttagggtgggaaaaataaaagtc |
137 |
Q |
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| T |
13312272 |
tttggatttcgtaatccaaagggcattttggtc-tttttgcaggacgcgtgagtatgacgtagggtgggaaaagtaaaagtc |
13312352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 25063628 - 25063709
Alignment:
| Q |
56 |
tttggattacgtaatccgaatgacatgttggtcatttttgcaggacgtgtgagtatggcttagggtgggaaaaataaaagtc |
137 |
Q |
| |
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||||||||| ||||||| || | ||||||||||||||||||| | || ||||||||||| | ||||||||||| ||| |||| |
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| T |
25063628 |
tttggattatgtaatccaaagggcatgttggtcatttttgcaaggcgcgtgagtatggcattgggtgggaaaagtaatagtc |
25063709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 13312186 - 13312252
Alignment:
| Q |
6 |
gtgaaactctgaaattggaggggtgaacttccttatgtatatcaaatttgtttggattacgtaatcc |
72 |
Q |
| |
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|||||||| | |||| ||||||| |||||||||||| ||||||||| | || ||||||||||||||| |
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| T |
13312186 |
gtgaaactgtaaaatgggaggggcgaacttccttatatatatcaaagtagtctggattacgtaatcc |
13312252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 898511 - 898434
Alignment:
| Q |
60 |
gattacgtaatccgaatgacatgttggtcatttttgcaggacgtgtgagtatggcttagggtgggaaaaataaaagtc |
137 |
Q |
| |
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|||||||||||||||| | ||||||||||||||||||||| || ||||||| | | ||| | ||||||||||| |||| |
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| T |
898511 |
gattacgtaatccgaagggcatgttggtcatttttgcagggcgagtgagtacgtcatagcgagggaaaaataatagtc |
898434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 40307750 - 40307798
Alignment:
| Q |
86 |
gtcatttttgcaggacgtgtgagtatggcttagggtgggaaaaataaaa |
134 |
Q |
| |
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||||||||||||||||| ||||| | ||| ||||||||||||| ||||| |
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| T |
40307750 |
gtcatttttgcaggacgcgtgagaagggcatagggtgggaaaagtaaaa |
40307798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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