View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_7 (Length: 596)

Name: NF16177_high_7
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_7
NF16177_high_7
[»] chr1 (9 HSPs)
chr1 (237-554)||(41448507-41448835)
chr1 (48-216)||(41431799-41431967)
chr1 (56-215)||(41426407-41426566)
chr1 (65-216)||(41442406-41442557)
chr1 (108-216)||(41453664-41453772)
chr1 (17-148)||(41448905-41449037)
chr1 (110-184)||(52472991-52473066)
chr1 (399-498)||(41453377-41453476)
chr1 (109-142)||(7238212-7238245)
[»] chr2 (4 HSPs)
chr2 (48-213)||(33370088-33370255)
chr2 (56-211)||(33363748-33363903)
chr2 (61-215)||(5839239-5839393)
chr2 (401-512)||(33369792-33369903)
[»] scaffold0648 (1 HSPs)
scaffold0648 (56-216)||(5894-6054)
[»] scaffold0274 (1 HSPs)
scaffold0274 (56-216)||(17404-17564)
[»] chr7 (1 HSPs)
chr7 (56-216)||(7762943-7763103)
[»] chr8 (1 HSPs)
chr8 (63-209)||(21223819-21223965)
[»] chr4 (1 HSPs)
chr4 (62-183)||(1004661-1004782)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 237 - 554
Target Start/End: Complemental strand, 41448835 - 41448507
Alignment:
Q  237 tcaaagaaatggccagctggttgagcagtatgcagaagcagtttcacactacatagtgtgtataagttcttaactccaacatcaaaataaatatctggac 336  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41448835 tcaaagaaatggccggctggttgagcaatatgcagaagcagtttcacactacatagtgtgtataagttcttaactccaacatcaaaacaaatatctggac 41448736  T
Q  337 ataattgaaccaaagataaatttggcatctttcagtaagaa-gttataaagaaaataagccaa---------ttcgataaaacgtgaactagccctacca 426  Q
    ||||| ||||||||||||| ||||| ||| |||||||||||  ||||||||||||||||||||         || ||||||||||||||||| |||||||    
T  41448735 ataatagaaccaaagataattttgggatcgttcagtaagaatattataaagaaaataagccaatgtactccgttggataaaacgtgaactagacctacca 41448636  T
Q  427 attcagtagcaatgaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtccgtaagcttgaaaaa-catttatttagtt 525  Q
     ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||     
T  41448635 tttcagtagcaatgaacagagttctattggaaaaattaacaatgattggatacagcctatatggttaagtccgtaagcttgaaaaagcagttatttagta 41448536  T
Q  526 tgagagttaacaaacgaaattcgacgaaa 554  Q
    |||||||||||||||||||||||||||||    
T  41448535 tgagagttaacaaacgaaattcgacgaaa 41448507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 48 - 216
Target Start/End: Complemental strand, 41431967 - 41431799
Alignment:
Q  48 aagtatcgtcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctc 147  Q
    ||||||| |||| ||| ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41431967 aagtatcatcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctc 41431868  T
Q  148 caataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 216  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41431867 caataatcacagccctcatgagatccatccttgattcgaagactctcacaaatattgtatctgatgagc 41431799  T

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Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 41426566 - 41426407
Alignment:
Q  56 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 155  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  41426566 tcaaccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagactgtcatggtaaggagtcccttttgctccaataatc 41426467  T
Q  156 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgag 215  Q
    || ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  41426466 acagccctcatgagatccatccttgattcacagactctcacaaatattgtatctgatgag 41426407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 41442557 - 41442406
Alignment:
Q  65 taccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccctc 164  Q
    ||||||||||||||||||||| ||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  41442557 taccgggggtacattgggatagccagttggaaagtgtacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagctctc 41442458  T
Q  165 atgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 216  Q
    | ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  41442457 aagagatccatccttgattcgcagactctcacaaatattgtatttgatgagc 41442406  T

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Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 41453772 - 41453664
Alignment:
Q  108 aaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtat 207  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  41453772 aaaaataaaagaccgtcatggtaaggagtctcttctgctccaataatcacagccctcaagagatccatccttgattcatagactctcacaaatattgtat 41453673  T
Q  208 ctgatgagc 216  Q
    |||||||||    
T  41453672 ctgatgagc 41453664  T

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Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 41449037 - 41448905
Alignment:
Q  17 atatattagtttgttgttccnnnnnnntatgaagtatcgtcaagcacataccgggggtacattgggatatccaggggg-aaagtaaacatcaaaaaagaa 115  Q
    ||||||||||||||||||||       ||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  41449037 atatattagtttgttgttccaaaaaaatatgaagtatcctcaaccacatactgggggtacattgggatatccaggggggaaagtaaacatcaaaaaagaa 41448938  T
Q  116 aagaccgtcatggtaaggagtcccttctgctcc 148  Q
    |||||||| ||||||||||||| ||||||||||    
T  41448937 aagaccgttatggtaaggagtctcttctgctcc 41448905  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 52473066 - 52472991
Alignment:
Q  110 aaagaaaagaccgtcatgg-taaggagtcccttctgctccaataatcactgccctcatgagatccatccttgattc 184  Q
    |||| |||||||||||| | |||||||| || |||||||||||||| || ||||||| ||||||||||||||||||    
T  52473066 aaagtaaagaccgtcattgataaggagttccatctgctccaataattacagccctcaagagatccatccttgattc 52472991  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 498
Target Start/End: Complemental strand, 41453476 - 41453377
Alignment:
Q  399 ttcgataaaacgtgaactagccctaccaattcagtagcaatgaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtcc 498  Q
    |||||||| ||| ||||||| |||||||  ||| ||| ||||||| |||||   ||  |||||||||||||||||||||||| || ||||||| ||||||    
T  41453476 ttcgataagacgggaactagacctaccatgtcaatagtaatgaacgaagtttgtttaaaaaaattaacaatgattggatacaacccatatggtgaagtcc 41453377  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 7238212 - 7238245
Alignment:
Q  109 aaaagaaaagaccgtcatggtaaggagtcccttc 142  Q
    |||||||||||||||||||||||| |||||||||    
T  7238212 aaaagaaaagaccgtcatggtaagaagtcccttc 7238245  T

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Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 48 - 213
Target Start/End: Complemental strand, 33370255 - 33370088
Alignment:
Q  48 aagtatcgtcaagcacataccggggg--tacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgc 145  Q
    ||||||| |||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33370255 aagtatcctcaaccacataccgggggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgc 33370156  T
Q  146 tccaataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatg 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33370155 tccaataatcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatg 33370088  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 33363903 - 33363748
Alignment:
Q  56 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 155  Q
    |||| ||| ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33363903 tcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatc 33363804  T
Q  156 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctga 211  Q
    || || |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33363803 acagctctcatgagatccatccttgattcgaagattctcacaaatattgtatctga 33363748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 5839239 - 5839393
Alignment:
Q  61 cacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgc 160  Q
    |||||||||| |||||||||||| | |||   || ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||    
T  5839239 cacataccggcggtacattgggaaagccaccaggtaagtaaagatcgaaaaagaaaagaccgtcatggtaaggagtcccgtctgctccaataattacagc 5839338  T
Q  161 cctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgag 215  Q
    ||||||||||||||| |||||||| || ||||  |||||||||| ||||||||||    
T  5839339 cctcatgagatccattcttgattcataaactcgaacaaatattgaatctgatgag 5839393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 401 - 512
Target Start/End: Complemental strand, 33369903 - 33369792
Alignment:
Q  401 cgataaaacgtgaactagccctaccaattcagtagcaatgaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtccgt 500  Q
    |||||| || |||||||| ||||||| |||| |||||||||||  || || || | |||||||||||| ||||||||||| || ||||||||||||||||    
T  33369903 cgataagacatgaactagacctaccatttcaatagcaatgaacggagctcgatagaaaaaattaacaacgattggatacaacccatatggttaagtccgt 33369804  T
Q  501 aagcttgaaaaa 512  Q
     |||| ||||||    
T  33369803 cagctcgaaaaa 33369792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 6054 - 5894
Alignment:
Q  56 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 155  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6054 tcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 5955  T
Q  156 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 216  Q
    || ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  5954 acagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagc 5894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 56 - 216
Target Start/End: Original strand, 17404 - 17564
Alignment:
Q  56 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 155  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17404 tcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 17503  T
Q  156 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 216  Q
    || ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  17504 acagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagc 17564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 56 - 216
Target Start/End: Original strand, 7762943 - 7763103
Alignment:
Q  56 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 155  Q
    |||| ||| |||||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  7762943 tcaaccacgtaccgggggttcatcgggatattcagggggaaagtataaatcaaaaaagaaaagaccatcatggtaaggagtcccttgtgctccaataatc 7763042  T
Q  156 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 216  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7763043 acagctctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 7763103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 21223819 - 21223965
Alignment:
Q  63 cataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccc 162  Q
    |||||||| |||||||||||| | |||  ||||||| ||| |||||||||||| || || ||||| ||||| || || ||||||||||||||||| ||||    
T  21223819 cataccggaggtacattgggaaagccactgggaaagaaaaaatcaaaaaagaataggccatcatgataaggggttccctctgctccaataatcacagccc 21223918  T
Q  163 tcatgagatccatccttgattcgtagactctcacaaatattgtatct 209  Q
    |||  ||||| || |||||||| || ||||| |||||||||| ||||    
T  21223919 tcaacagatctattcttgattcataaactctgacaaatattgaatct 21223965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 62 - 183
Target Start/End: Complemental strand, 1004782 - 1004661
Alignment:
Q  62 acataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgcc 161  Q
    |||||||||||||||| |||||||   |   || ||||||| ||||||||||||||||||||  |||||||||||||||| || ||||||||| || |||    
T  1004782 acataccgggggtacaatgggatagttactagggaagtaaaaatcaaaaaagaaaagaccgtgctggtaaggagtcccttttggtccaataattacagcc 1004683  T
Q  162 ctcatgagatccatccttgatt 183  Q
    ||||  |||| |||| ||||||    
T  1004682 ctcaacagattcatctttgatt 1004661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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