View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_high_77 (Length: 296)

Name: NF16177_high_77
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_high_77
NF16177_high_77
[»] chr4 (1 HSPs)
chr4 (62-162)||(10634239-10634339)
[»] chr5 (1 HSPs)
chr5 (226-289)||(17205597-17205660)
[»] chr1 (5 HSPs)
chr1 (60-259)||(29718792-29718994)
chr1 (60-167)||(29658765-29658872)
chr1 (60-167)||(29691280-29691387)
chr1 (60-167)||(33160696-33160803)
chr1 (92-162)||(30827304-30827374)
[»] chr6 (1 HSPs)
chr6 (62-156)||(6594411-6594505)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 10634239 - 10634339
Alignment:
Q  62 aagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagctatt 161  Q
    |||||||||||||||||| ||||| |||||||| |||||||| ||||| || |||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  10634239 aagtctctttgtttggctcactgtgagctgttgggagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctggatttgagttatt 10634338  T
Q  162 g 162  Q
    |    
T  10634339 g 10634339  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 17205660 - 17205597
Alignment:
Q  226 cttgtcatacacagatgttgatgataaatcactctgtctcatctcaaagtgttttcctatgctt 289  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  17205660 cttgtcatacacagatgttgatgataaatcactctgtatcatctaaaagtgttttcctatgctt 17205597  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 29718792 - 29718994
Alignment:
Q  60 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 159  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||  |  ||||| |||||||||||||||||||||||||||| |||||||||||    
T  29718792 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagcta 29718891  T
Q  160 ttggaagggcatgtgtgaggaaattgttggtctagtattaaga---tgtcataatcttaagcatatgaacttgtcatacacagatgttgatgataaatca 256  Q
    ||||||||   ||| ||| |||| ||||  |  ||| ||||||   |||  |||  |||||||| ||||||||||||| ||  | |||||||||||||||    
T  29718892 ttggaaggaagtgtctgaagaaactgtttctaaagttttaagatgttgtactaagattaagcatttgaacttgtcatataccaacgttgatgataaatca 29718991  T
Q  257 ctc 259  Q
    |||    
T  29718992 ctc 29718994  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 29658765 - 29658872
Alignment:
Q  60 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 159  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||| |  ||||| |||||||||||||||||||||| ||||| |||||||||||    
T  29658765 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagcta 29658864  T
Q  160 ttggaagg 167  Q
    ||||||||    
T  29658865 ttggaagg 29658872  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 29691280 - 29691387
Alignment:
Q  60 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 159  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||  |  ||||| |||||||||||||||||||||||||||| |||||||||||    
T  29691280 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagcta 29691379  T
Q  160 ttggaagg 167  Q
    ||||||||    
T  29691380 ttggaagg 29691387  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 33160803 - 33160696
Alignment:
Q  60 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 159  Q
    |||||||||||| ||||||  ||||| |||  |||||||||||||||||| |  ||||| ||| ||| |||||||| ||||||||||| |||||||||||    
T  33160803 taaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgcttgatttgagcta 33160704  T
Q  160 ttggaagg 167  Q
    || |||||    
T  33160703 ttcgaagg 33160696  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 30827374 - 30827304
Alignment:
Q  92 ttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagctattg 162  Q
    |||||||||||||||||| |  |||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  30827374 ttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 30827304  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 6594411 - 6594505
Alignment:
Q  62 aagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgag 156  Q
    ||||||||||||||||||  |||| |||  |||| ||||||||||||| |  ||||| |||| ||||||||||  |||||| |||| ||||||||    
T  6594411 aagtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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