View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_81 (Length: 286)
Name: NF16177_high_81
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_81 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 43040773 - 43041044
Alignment:
| Q |
1 |
agaagtctgaaattatttttccacaactggccataaacttattttaattgaaaatatcctagtatataagttagaagctagtccaaactggatctttgcc |
100 |
Q |
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| T |
43040773 |
agaagtctgaaattatttttccacaactggccataaacttattttaattgaaaatatcctagtatagaagttagaagctagtccaaactggatctttgcc |
43040872 |
T |
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| Q |
101 |
cagcttaaagttattgtact--gagcttgaagtatgttgaccttagttttgcatatttatttacaggtctgggcaggtcctttatcaggtaattgtttgg |
198 |
Q |
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| T |
43040873 |
cagcttaaagttattgtactacgagcttgaagtatgttgaccttagttttgcatatttatttacaggtctgggcaggtcctttatcaggtaattgtttgg |
43040972 |
T |
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| Q |
199 |
ctgttgctctttggaatcgatgctcaagagttgcgactataacagcattatgggcagcactcgggcttgaat |
270 |
Q |
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| T |
43040973 |
ctgttgctctttggaatcgatgctcaagagttgcgactataacagcattatgggcagcactcgggcttgaat |
43041044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 43028245 - 43028515
Alignment:
| Q |
2 |
gaagtctgaaattatttttccacaactggccataaacttattttaattgaaaatatcctagtatataagttagaagctagtccaaactggatctttgccc |
101 |
Q |
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| T |
43028245 |
gaagtctgaaattatttttccacaactggccataaacttattttaattgaaaatatcttagtatagaagttagaagctagtccaaactggatctttcccc |
43028344 |
T |
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| Q |
102 |
agcttaaagttattgtact--gagcttgaagtatgttgaccttagttttgcatatttatttacaggtctgggcaggtcctttatcaggtaattgtttggc |
199 |
Q |
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| T |
43028345 |
agcttaaagttacagtaccacgagcttgaagtatgttgaccttagttttgcatatttatttacaggtctgggcaggtcctttatcaggaaatcgtttgac |
43028444 |
T |
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| Q |
200 |
tgttgctctttggaatcgatgctcaagagttgcgactataacagcattatgggcagcactcgggcttgaat |
270 |
Q |
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| T |
43028445 |
tgttgctctttggaatcgatgctcaaaagttgcgactataacagcatcatgggaagcacttgggcttgaat |
43028515 |
T |
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