View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_9 (Length: 574)
Name: NF16177_high_9
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 8229753 - 8230299
Alignment:
| Q |
16 |
aaatcattgttgttcactactctcttttttccaatatacttacttacattttacttttaataagactataagctacaacaactcccataattagagaaag |
115 |
Q |
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| T |
8229753 |
aaatcattgttgttcactactctcttttttccaatatacttaattacattttacttttaataagactataagctacaacaactcccataattagagaaag |
8229852 |
T |
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| Q |
116 |
atcaatatttggctccaccaccattgtgaaaacatcatctcctagatcaattccacaagttgacttctttctccttagctgctcatagaaaaaacataaa |
215 |
Q |
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| T |
8229853 |
atcaatatttggctccaccaccattgtgaaaacatcatttcctagatcaattccacaagttgacttctttctccttagctgctcatagaaaaaacataaa |
8229952 |
T |
|
| Q |
216 |
ttagtacatgtacttaagcatttatatatgtttatgttgtttaccaaactttgctgaaaaaatgttagaaatcttaattacctctgcaactatcactcca |
315 |
Q |
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| T |
8229953 |
ttagtacatgtacttaagcatttatatatgtttatgttgtttaccaaactttgctgaaaaaatgttagaaatcttaattacctctgcaactatcactcca |
8230052 |
T |
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| Q |
316 |
ttcttgtccattattttgcaagctggcttgcaagtgctgctttctattttataattatatggttggtttttatccaatccaagttcaacttcataacttg |
415 |
Q |
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| T |
8230053 |
ttcttgtccattattttgcaagctggcttgcaagtgctgctttctattttataattatatggttggtttttatccaatccaagttcaacttcataacttg |
8230152 |
T |
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| Q |
416 |
aatcccatttagagatgctatatgttttaccaactcgaaagcatggtcctttctggtcgttccttctcgccggaagcttgtaaccctcccaaaacctaga |
515 |
Q |
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| T |
8230153 |
aatcccatttagagatgctatatgttttaccaactcgaaagcatggtcctttctggtcgttccttgtcgccggaagcttgtaaccctcccaaaacctaga |
8230252 |
T |
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| Q |
516 |
caacttatattgctgcacgcacaaacattcatacacatgttaatatt |
562 |
Q |
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| T |
8230253 |
caacttatattgctgcacgcacaaacatacatacacatgttaatatt |
8230299 |
T |
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