View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_high_96 (Length: 250)
Name: NF16177_high_96
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_high_96 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 51875500 - 51875265
Alignment:
| Q |
1 |
ccaaagcccaacaaaacccatcttcacaacaaacccaagaacaatagccacaggcatacctaccaaataaaaagaccccaaattgatatttgcacctacc |
100 |
Q |
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| T |
51875500 |
ccaaagcccaacaaaacccatcttcacaacaaacccaagaacaatagccacaggcatacctaccaaataaaaagaccccaaattgatatttgcacctacc |
51875401 |
T |
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| Q |
101 |
gtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaaagcccaacaattggcaaagccatagccgttagat |
200 |
Q |
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| T |
51875400 |
gtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaaagcccaacaattggcaaagccatagccgttagat |
51875301 |
T |
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| Q |
201 |
taataatctcgtcatcactagtaaacaatctccccc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51875300 |
taataatctcgtcatcactagtaaacaatctccccc |
51875265 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 45845425 - 45845516
Alignment:
| Q |
80 |
aaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaaagccc |
171 |
Q |
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| T |
45845425 |
aaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacatagccc |
45845516 |
T |
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