View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_1 (Length: 797)
Name: NF16177_low_1
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 413
Target Start/End: Complemental strand, 52742599 - 52742219
Alignment:
| Q |
20 |
tcttcgttaaacaacctctttgcttctaattttgaaacccttttatcttgtatttgatattttcttcaatatcatgtaataaactagtctttttcagatt |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52742599 |
tcttcgttaaacaacctctttgcttctaatttcgaaacccttttatcttgtatttgatattttcttcaatatcatgtaataaactagtctttttcaaatt |
52742500 |
T |
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| Q |
120 |
cagtgtttgtttttaggggtttttgtttggttggaggattcaattcaatacactttgggaatctagggtttgggtcnnnnnnncaatgtgttattttgat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52742499 |
cagtgtttgtttttaggggtttttgtttggttggaggattcaattcaatacactttgggaatctagggtttgggtcttttttttaatgtgttattttgat |
52742400 |
T |
|
| Q |
220 |
tattgttattatcgtaattgctgcgatttctgtgagtgaagagatgcttcacgagaggccaattttattgcgacaaattcctttgagaagaaggttgttg |
319 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52742399 |
tattgttattatcataattgctgccatttctgtgagtgaagagatgcttcacgagaggccaattttattgcgacaaattcctttgagaagaaggttgttg |
52742300 |
T |
|
| Q |
320 |
aggctgttggagtttaacagctaaactaaaaacttcccttcagtctagcctcttccagttcagccgaacctttacttggaggcagtaaaaccgt |
413 |
Q |
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| T |
52742299 |
aggct-------------agctaaactaaaaacttcccttcagtctagcctcttccagttcagctgaacctttacttggaggcagtaaaaccgt |
52742219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 469 - 667
Target Start/End: Complemental strand, 52742163 - 52741965
Alignment:
| Q |
469 |
taagctgaaccttttgggctatctccctgtaattccatatgttatctatgctgttaccaatttctcaatttagcctttgtaagttgcgtgtatggtaggg |
568 |
Q |
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| T |
52742163 |
taagctgaaccttttgggttatctccctggaattccatatgttatctatgctattaccaatttctcaatttagcctttgtaagttgcgtgtatggtaggg |
52742064 |
T |
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| Q |
569 |
ttttgatttctgggttttatcaacatttaattttgagtttttatttgagattgacgaagatgaaaattagaagcaagggattgatgaaaattttgatgt |
667 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52742063 |
ttttgatttctgggttttatcaacatttaattttgagtttttatttgagattgatgaagatgaaaattagaagcaagggattgatgaaaattttgatgt |
52741965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 327 - 413
Target Start/End: Complemental strand, 28027829 - 28027743
Alignment:
| Q |
327 |
tggagtttaacagctaaactaaaaacttcccttcagtctagcctcttccagttcagccgaacctttacttggaggcagtaaaaccgt |
413 |
Q |
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| T |
28027829 |
tggagtttaacagctaaactaaaaacttcccttcagtctagcctcttccagttcggctgaacctttacttggaggcaataaaaccgt |
28027743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 478 - 645
Target Start/End: Complemental strand, 39591590 - 39591421
Alignment:
| Q |
478 |
ccttttgggctatctccctgtaattccatatgttatctatgctgttaccaatttctcaatttagcctttgtaagttgcgtgtatggtagggttttgattt |
577 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||| | | | |||||||||||||||||||||| |||||| ||||| ||||||||| |
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| T |
39591590 |
ccttttgggctatctccctgaaattccatatgttatctatgctattatctagtgttcaatttagcctttgtaagttgtgtgtattgtaggattttgattt |
39591491 |
T |
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| Q |
578 |
ctgggttttatcaacatttaattttgagttttta--tttgagattgacgaagatgaaaattagaagcaag |
645 |
Q |
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| T |
39591490 |
ttgggttttatcaacatttaattttgggtttttatttttgagattgatgaagatgaaagttagaagcaag |
39591421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 478 - 645
Target Start/End: Original strand, 52980618 - 52980787
Alignment:
| Q |
478 |
ccttttgggctatctccctgtaattccatatgttatctatgctgttaccaatttctcaatttagcctttgtaagttgcgtgtatggtagggttttgattt |
577 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||| | | |||||||||||||| ||||||| |||| | ||||| ||||||||| |
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| T |
52980618 |
ccttttgggctatctccctagaattccatatgttatctatgctattacctagtgttcaatttagcctttctaagttgtgtgtgttgtaggattttgattt |
52980717 |
T |
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| Q |
578 |
ctgggttttatcaacatttaattttgagttttta--tttgagattgacgaagatgaaaattagaagcaag |
645 |
Q |
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| T |
52980718 |
atgggttttatcaacatttaattttgggtttttatttttgagattgatgaagataaaagttagaagcaag |
52980787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 2377834 - 2377740
Alignment:
| Q |
206 |
tgtgttattttgattattgtta---ttatcgtaattgctgcgatttctgtgagtgaagagatgcttcacgagaggccaattttattgcgacaaat |
297 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||| |||| |
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| T |
2377834 |
tgtgttattttgattattattactattatcataattgctgcgatttctgtgagtgaagacatacttcagaagaggccaatttcattgcgaaaaat |
2377740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 2378656 - 2378590
Alignment:
| Q |
110 |
ttttcagattcagtgtttgtttttaggggtttttgtttggttggaggattcaattcaatacactttggg |
178 |
Q |
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||||||||||||| ||||||||||||| ||| |||||| || ||||||||||||||||||||||||| |
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| T |
2378656 |
ttttcagattcagcgtttgtttttaggtatttg-gtttggatg-aggattcaattcaatacactttggg |
2378590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 10919478 - 10919574
Alignment:
| Q |
227 |
attatcgtaattgctgcgatttctgtgagtgaagagatgcttcacgagaggccaattttattgcgacaaattcctttgagaagaaggttgttgaggc |
323 |
Q |
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|||||| ||||| ||| | |||||||||| ||||| |||||||| ||||||||||||| |||||||||| | ||| |||||| ||||||||||||| |
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| T |
10919478 |
attatcataatttctgtggtttctgtgagagaagacatgcttcaggagaggccaatttcgttgcgacaaagttcttcgagaaggaggttgttgaggc |
10919574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 10919400 - 10919443
Alignment:
| Q |
152 |
ggaggattcaattcaatacactttgggaatctagggtttgggtc |
195 |
Q |
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| T |
10919400 |
ggaggtttcaattcaatacactttgggaatctagggtttgggtc |
10919443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 10919308 - 10919345
Alignment:
| Q |
25 |
gttaaacaacctctttgcttctaattttgaaacccttt |
62 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
10919308 |
gttaaacaacctctttgcttctaatttcaaaacccttt |
10919345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 45746227 - 45746301
Alignment:
| Q |
478 |
ccttttgggctatctccctgtaattccatatgttatctatgctgttaccaatttctcaatttagcctttgtaagt |
552 |
Q |
| |
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|||||| ||||||||||||| ||||| |||| |||||||||| ||||||| | |||||||||| ||||||||| |
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| T |
45746227 |
cctttttggctatctccctggaattctctatgctatctatgctattaccaagtgatcaatttagcttttgtaagt |
45746301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 588 - 667
Target Start/End: Original strand, 49333743 - 49333824
Alignment:
| Q |
588 |
tcaacatttaattttgagtttttattt--gagattgacgaagatgaaaattagaagcaagggattgatgaaaattttgatgt |
667 |
Q |
| |
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|||| ||||||||||||||| |||||| |||||||| |||||| |||| ||||||| | ||||||||| |||||||||| |
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| T |
49333743 |
tcaaaatttaattttgagttattatttcggagattgatgaagatagaaatcagaagcatgaaattgatgaagattttgatgt |
49333824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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