View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_10 (Length: 576)
Name: NF16177_low_10
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 31 - 560
Target Start/End: Complemental strand, 42465258 - 42464724
Alignment:
| Q |
31 |
aagttattgtctagaaacagtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaag |
130 |
Q |
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| T |
42465258 |
aagttattgtctagaaacagtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaag |
42465159 |
T |
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| Q |
131 |
aaaatggtgttactgtacaaaatataaagtcgtgccaacatgtttaatcatatgatatatcc----agaggattatcaattctttcacagctgcacgttg |
226 |
Q |
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| T |
42465158 |
aaaatggtgttactgtacaaaatataaagtcgtgccaacatgtttaatcatatgatatatcctctcagaggattaacaattctttcacagctgcacgttg |
42465059 |
T |
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| Q |
227 |
ttaattatataattaaacattttcactagctgaatttagatattcaaaaagtacatagaagtccatgaaattgaacttaaatacctcaaagtggttttta |
326 |
Q |
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| T |
42465058 |
ttaattatataattaaacattttcactagctgaatttagatattcaaaaagtacatagaagtccatgaaattgaacttaaatacctcaaagtggttttta |
42464959 |
T |
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| Q |
327 |
gctagtctagattctaggcatttatatttttcgaaggtccaaacttatattcaagaatcaagatgttgatctagtgttcattttaattttccatgcattg |
426 |
Q |
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| T |
42464958 |
gctagtctagagtctaggcatttatatttttcgaaggtccaaacttatattcaagaatcaagatgttgatctagtgttcattttaattttccatgcattg |
42464859 |
T |
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| Q |
427 |
tata-tttaagcagaggccataagcaactaacctatgaaaaggttataataatcccgctgagcttttaatatcaagcaatttgttcggtcacattcgcaa |
525 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| | |
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| T |
42464858 |
tatactttaagcagaggccataagcaactaacctatgaaaaggttataataatcccgctgagcttttaatatcaagcaatttattcaatcatattcgcta |
42464759 |
T |
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| Q |
526 |
aaaatgttaacattcgatttattttaccatcatac |
560 |
Q |
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| T |
42464758 |
aaaatgttaacattcgatttattataccatcatac |
42464724 |
T |
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