View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_100 (Length: 261)
Name: NF16177_low_100
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 42815510 - 42815743
Alignment:
| Q |
12 |
atgaatgcctcatatgtagctggaacattgaactagataagttccatattttcaagtctatgtgacagatgaacttctggactggctcttaaagatggaa |
111 |
Q |
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| T |
42815510 |
atgaatgcctcatatgtagctggaacattgaactagataagttccatattttcaagtctatgtgacagatgaacttctggactggctcttaaagatggaa |
42815609 |
T |
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| Q |
112 |
tggttgttttgtcttcaaatgttcccttgttgactcttggtgatggattaagatgttcaagtgcctgaagttgaagttttggtgggtactctcttacata |
211 |
Q |
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| T |
42815610 |
tggttgttttgtcttcaaatgttccattgttgactcttggtgatggattaagatgttcaagtgcctgaagttgaagttttggtgggtactctcttacata |
42815709 |
T |
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| Q |
212 |
accaatcctaggaccaacaccagtagtccatttg |
245 |
Q |
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| T |
42815710 |
accaatcctaggaccaacaccagtagtccatttg |
42815743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 6003061 - 6003173
Alignment:
| Q |
133 |
ttcccttgttgactcttggtgatggattaagatgttcaagtgcctgaagttgaagttttggtgggtactctcttacataaccaatcctaggaccaacacc |
232 |
Q |
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| T |
6003061 |
ttccattgttgactctaggtgataaattgagttgttgaagtgccttagcttggagtgttgatgggtactctctcacacaaccaatcctaggaccagctcc |
6003160 |
T |
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| Q |
233 |
agtagtccatttg |
245 |
Q |
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| T |
6003161 |
agtggtccatttg |
6003173 |
T |
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