View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_102 (Length: 260)
Name: NF16177_low_102
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 44298045 - 44297828
Alignment:
| Q |
18 |
agagaatccattacagcaataggaaaacgaaatccagcttagccaccacgagcttaaatagcagtgattctctattatcacaaatggaaaactcgataac |
117 |
Q |
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| T |
44298045 |
agagaatccattacagcaataggaaaacgaaatccagcttagccaccacgagcttaaatagcagtgattctctattatcacaaatggaaaactcgataac |
44297946 |
T |
|
| Q |
118 |
tggtaatattttaaaggcaaaaatatttgtaacaagttagaaggttgtaacaaattcattgttcaatttctttgtaataaattgaatttttaagtaataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44297945 |
tggtaatattttaaaggcaaaaatatttgtaacaagttagaaggttgtaacaaattcattgttcaatttctttgtaataaattgaatttttaagtaataa |
44297846 |
T |
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| Q |
218 |
tatattcatatggttgct |
235 |
Q |
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|||||||||||||||||| |
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| T |
44297845 |
tatattcatatggttgct |
44297828 |
T |
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