View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_103 (Length: 253)
Name: NF16177_low_103
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_103 |
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| [»] scaffold1663 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14292369 - 14292612
Alignment:
| Q |
1 |
cgggggcggatccagacagtgtagttaggtgtggctaaatttaaaaccacaagcacacatgtgatattatatatcaacatgcaaatcaaaagtaaatctt |
100 |
Q |
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| T |
14292369 |
cgggggcggatccagacagtgtagttaggtgtggctaaatttaaaaccacaagcacacatgtgatattatatatcaacatgcaaatcaaaagtaaatctt |
14292468 |
T |
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| Q |
101 |
acatgtcctggtcacgctcattggctaaagcagtttttgcaatacaaaggaatgcatcatcaacattgaagtcctcttttgcagaagtctcaaagtaggg |
200 |
Q |
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| T |
14292469 |
acatgtcctggtcacgctcattggctaaagcagtttttgcaatacacaggaatgcatcatcaacattgaagtcctcttttgcagaagtctcaaagtaggg |
14292568 |
T |
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| Q |
201 |
aatattcccttttgcggcgcaccatttctttgctttcttctcag |
244 |
Q |
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| T |
14292569 |
aatattcccttttgaggcgcaccatttctttgctttcttctcag |
14292612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 43949012 - 43948868
Alignment:
| Q |
98 |
cttacatgtcctggtcacgctcattggctaaagcagtttttgcaatacaaaggaatgcatcatcaacattgaagtcctcttttgcagaagtctcaaagta |
197 |
Q |
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| T |
43949012 |
cttacatgtcctgttcacgctcattggccagggcagtcttggcaatacacaggaatgcagcatcaacattgtaatcctcttttgcagatgtctcaaagta |
43948913 |
T |
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| Q |
198 |
gggaatattcccttttgcggcgcaccatttctttgctttcttctc |
242 |
Q |
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| T |
43948912 |
gggaatattcccttttgaagcacaccagtcatttgctttcttctc |
43948868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1663 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1663
Description:
Target: scaffold1663; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 94 - 244
Target Start/End: Original strand, 134 - 284
Alignment:
| Q |
94 |
aaatcttacatgtcctggtcacgctcattggctaaagcagtttttgcaatacaaaggaatgcatcatcaacattgaagtcctcttttgcagaagtctcaa |
193 |
Q |
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|||||||||||||| || ||||| ||||||||||| ||||| || ||||||| ||||||||| |||||||||||| ||| || ||| |||| ||||||| |
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| T |
134 |
aaatcttacatgtcttgctcacgttcattggctaatgcagtcttggcaatacgtaggaatgcagcatcaacattgaggtcttcctttacagatgtctcaa |
233 |
T |
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| Q |
194 |
agtagggaatattcccttttgcggcgcaccatttctttgctttcttctcag |
244 |
Q |
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|||| |||| ||||||||||| ||| ||||| | |||||||||||| |||| |
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| T |
234 |
agtaaggaacattcccttttgaggcacaccagtcctttgctttcttatcag |
284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 39873615 - 39873699
Alignment:
| Q |
160 |
tcaacattgaagtcctcttttgcagaagtctcaaagtagggaatattcccttttgcggcgcaccatttctttgctttcttctcag |
244 |
Q |
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|||||||| || |||| |||||||| ||||||||||| || |||||||| || | || |||||| ||||||||||||||||| |
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| T |
39873615 |
tcaacattaaaaccctcctttgcagaggtctcaaagtatggtatattccccttggaagcacaccatgcctttgctttcttctcag |
39873699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 43838949 - 43839033
Alignment:
| Q |
160 |
tcaacattgaagtcctcttttgcagaagtctcaaagtagggaatattcccttttgcggcgcaccatttctttgctttcttctcag |
244 |
Q |
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|||||||| || |||| |||||||| ||||||||||| || |||||||| || | || |||||| ||||||||||||||||| |
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| T |
43838949 |
tcaacattaaaaccctcctttgcagaggtctcaaagtatggtatattccccttggaagcacaccatgcctttgctttcttctcag |
43839033 |
T |
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