View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_106 (Length: 247)
Name: NF16177_low_106
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_106 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36891015 - 36890784
Alignment:
| Q |
1 |
catgtatatgtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagagga |
100 |
Q |
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| T |
36891015 |
catgtatatgtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagagga |
36890916 |
T |
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| Q |
101 |
gttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcagataacacatatgtataaccaa |
200 |
Q |
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| T |
36890915 |
gttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcacataacacatatgtataaccaa |
36890816 |
T |
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| Q |
201 |
ttatagaaca--atatgtcaatatctgtttct |
230 |
Q |
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|||||| ||| |||||||||||||||||||| |
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| T |
36890815 |
ttatagcacaatatatgtcaatatctgtttct |
36890784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 36877939 - 36877777
Alignment:
| Q |
10 |
gtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattct |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
36877939 |
gtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagctgcaaggactttgagaggagttgatcct |
36877840 |
T |
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| Q |
110 |
tctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtt |
172 |
Q |
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| T |
36877839 |
tctttgttcagatgtgtgctgaggtaatcatattgatgtactattatcacagccaaatctgtt |
36877777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 36897705 - 36897546
Alignment:
| Q |
11 |
tacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattctt |
110 |
Q |
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||||||| || |||||||||||| |||||||||| ||| |||| | ||||||||| |||||||| || | ||||||| | |||||||| ||| | | |
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| T |
36897705 |
tacttactgtagtataggattcgtttataccatggtaggctgctagaacttttgaaagctgaaggcttattagcaaggagatacagaggagtggatacct |
36897606 |
T |
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| Q |
111 |
ctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctg |
170 |
Q |
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||| |||| |||||||||| |||||| ||||||||| | ||| ||||||||| ||||||| |
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| T |
36897605 |
cttcgttctgatgtgtgctaaggaaagcatagtaatttgctattatcacagctaaatctg |
36897546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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