View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_110 (Length: 245)
Name: NF16177_low_110
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_110 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0401 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 16919101 - 16919340
Alignment:
| Q |
6 |
cagagaatcagtttccagccagaaattggaccaatgctttgaatctacaaactctattgatctcatagcaccaaccagctcagcatagagagaattacca |
105 |
Q |
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| T |
16919101 |
cagagagtcagtttccagccagaaattggaccaatgctttgaatctgcaaactctattgatctcatagcacctaccagctcagcatagagagaattacca |
16919200 |
T |
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| Q |
106 |
aagctcagtccttcaacaaaacatcccatgaattggccaaaattgtttctgaaaataccaccacaggcagccttaccagatgcaaaagctccatcacagt |
205 |
Q |
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| T |
16919201 |
aagctcaggccttccgcaaaacaacccatgaattggccaaaattgtttctgaaaataccaccacaggcagccttaccagatgcaaaagctccatcacagt |
16919300 |
T |
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| Q |
206 |
ttccttttatccaaccagtaattggaggattccataaaac |
245 |
Q |
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| T |
16919301 |
ttccttttatccaaccagtaattggaggattccataaaac |
16919340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 43235800 - 43235725
Alignment:
| Q |
148 |
ttgtttctgaaaataccaccacaggcagccttaccagatgcaaaagctccatcacagtttccttttatccaaccag |
223 |
Q |
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| T |
43235800 |
ttgtttctaaaaatagcaccacaagaagccttacctgatgctaaggcgccatcataattcccttttatccaaccag |
43235725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 11404057 - 11403848
Alignment:
| Q |
9 |
agaatcagtttccagccagaaattggaccaatgctttgaatctacaaactctattgatctcatagcaccaaccagctcagcatagagagaattaccaaag |
108 |
Q |
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| T |
11404057 |
agaatcggtttccagctagaaattggaccaatgctttgaatctgcaaactctactgatctcatagcaccaaccaactcagcatagagagaattaccaaag |
11403958 |
T |
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| Q |
109 |
ctcagtccttcaacaaaacatcccatgaattggccaaaattgtttctgaaaataccaccacaggcagccttaccagatgcaaaagctccatcacagtttc |
208 |
Q |
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| T |
11403957 |
ctcaggccttcagcaaaacatcccatgaattggccaaaattgtttatgaatataccaccacaggcagccttaccagatgcaaaagctccatcacagtttc |
11403858 |
T |
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| Q |
209 |
cttttatcca |
218 |
Q |
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| T |
11403857 |
cttttatcca |
11403848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 43577774 - 43577680
Alignment:
| Q |
9 |
agaatcagtttccagccagaaattggaccaatgctttgaatctacaaactctattgatctcatagcaccaaccagctcagcatagagagaattac |
103 |
Q |
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| T |
43577774 |
agaatcagtttccagccagaaattggaccaatgctttgaatctgcaaactctattgatctcatagcacctaccagctcagcatagagagaattac |
43577680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 22052017 - 22051924
Alignment:
| Q |
130 |
cccatgaattggccaaaattgtttctgaaaataccaccacaggcagccttaccagatgcaaaagctccatcacagtttccttttatccaaccag |
223 |
Q |
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| T |
22052017 |
cccatgaactgaccaagcttgtttctaaaaatagcaccacaagaagccttacctgatgcaaaggcgccatcacaattcccttttatccaaccag |
22051924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 233
Target Start/End: Original strand, 31437827 - 31437999
Alignment:
| Q |
61 |
attgatctcatagcaccaaccagctcagcatagagagaattaccaaagctcagtccttcaacaaaacatcccatgaattggccaaaattgtttctgaaaa |
160 |
Q |
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| T |
31437827 |
attgatctcatggcaccattaagcttagcaaagagagagtttccaaagttcagaacttcagcaaaagctcccataaattgaccaaacttgtttctaaaga |
31437926 |
T |
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| Q |
161 |
taccaccacaggcagccttaccagatgcaaaagctccatcacagtttccttttatccaaccagtaattggagg |
233 |
Q |
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| T |
31437927 |
tttcaccacaagcagccttaccagatgcaaatgctccatcacaattaccctttatccaacaagcaatttgagg |
31437999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0401 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0401
Description:
Target: scaffold0401; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 12216 - 12431
Alignment:
| Q |
4 |
agcagagaatcagtttccagccagaaattggaccaatgctttgaatctacaaactctattgatctcatagcaccaaccagctcagcatagagagaattac |
103 |
Q |
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|||| |||||| |||||||||||||||||| |||| ||| || | |||||||||| |||||||| |||||| ||||||||| | ||||| || | |
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| T |
12216 |
agcatagaatctgtttccagccagaaattgttccaacccttagattgagcaaactctatagatctcatggcaccacaaagctcagcaaaaagagagtttc |
12315 |
T |
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| Q |
104 |
caaagctcagtccttcaacaaaacatcccatgaattggccaaaattgtttctgaaaataccaccacaggcagccttaccagatgcaaaagctccatcaca |
203 |
Q |
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| T |
12316 |
cataagacaaaccttcagcaaaacaacccaaaaattgaccaagcctatttctaaagataccaccacaggcagctttcccagaggcaaaggcaccatcaca |
12415 |
T |
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| Q |
204 |
gtttccttttatccaa |
219 |
Q |
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| T |
12416 |
attccctttaatccaa |
12431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 15183261 - 15183046
Alignment:
| Q |
4 |
agcagagaatcagtttccagccagaaattggaccaatgctttgaatctacaaactctattgatctcatagcaccaaccagctcagcatagagagaattac |
103 |
Q |
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|||| |||||| |||||||||||||||||| |||| ||| || | |||||||||| |||||||| |||||| ||||||||| | ||||| || | |
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| T |
15183261 |
agcatagaatctgtttccagccagaaattgttccaactcttagattgagcaaactctatagatctcatggcaccacaaagctcagcaaaaagagagtttc |
15183162 |
T |
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| Q |
104 |
caaagctcagtccttcaacaaaacatcccatgaattggccaaaattgtttctgaaaataccaccacaggcagccttaccagatgcaaaagctccatcaca |
203 |
Q |
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| T |
15183161 |
cataagacaaaccttcagcaaaacatcccaaaaattgaccaagtctatttctaaagataccaccacaggcagctttcccagaggcaaaggcaccaacaca |
15183062 |
T |
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| Q |
204 |
gtttccttttatccaa |
219 |
Q |
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| T |
15183061 |
attccctttaatccaa |
15183046 |
T |
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