View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_112 (Length: 240)
Name: NF16177_low_112
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_112 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 12523166 - 12522945
Alignment:
| Q |
19 |
gagtaaccttctggaagtgcacttatgaagttatgagcatttgctagcttagctgcttcaattacttctgaatcagatgcaccttcctttccataaagaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12523166 |
gagtaaccttctggaagtgcacttatgaagttatgagcatttgctagcttagctgcttcaattacttctgaatcagatgcaccttcctttccataaagaa |
12523067 |
T |
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| Q |
119 |
tgttttcgtaaattgatgtagcgaaaagtgctggttcttgttgtacaagaccaatgtgttttctaagagattttagatttattcttgtgatgtcttttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12523066 |
tgttttcgtaaattgatgtagcgaaaagtgctggttcttgttgtacaagaccaatgtgttttctaagagattttagatttattcttgtgatgtcttttcc |
12522967 |
T |
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| Q |
219 |
tgcaagaatttgattcatcatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
12522966 |
tgcaagaatttgattcatcatt |
12522945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 12535712 - 12535599
Alignment:
| Q |
20 |
agtaaccttctggaagtgcacttatgaagttatgagcatttgctagcttagctgcttcaattacttctgaatcagatgcaccttcctttccataaagaat |
119 |
Q |
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|||||||||||||||| ||||| || |||||||||| |||| | | | || |||||||||| |||||| ||||| ||||||||||| |||||||||| |
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| T |
12535712 |
agtaaccttctggaagagcactgattaagttatgagtatttccaaacctaactgcttcaatcacttctaaatcaatggcaccttccttcccataaagaaa |
12535613 |
T |
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| Q |
120 |
gttttcgtaaattg |
133 |
Q |
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| T |
12535612 |
attttcataaattg |
12535599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 27731212 - 27731011
Alignment:
| Q |
19 |
gagtaaccttctggaagtgcacttatgaagttatgagcatttgctagcttagctgcttcaattacttctgaatcagatgcaccttcctttccataaagaa |
118 |
Q |
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||||| ||||| ||||||||||| ||||| |||||||| | ||||| |||||||||||||| |||||||| |||||||| |||| |||||||| |||| |
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| T |
27731212 |
gagtagccttcgggaagtgcactaatgaaattatgagcgtcggctagtttagctgcttcaatcacttctgattcagatgcttcttcttttccatatagaa |
27731113 |
T |
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| Q |
119 |
tgttttcgtaaattgatgtagcgaaaagtgctggttcttgttgtacaagaccaatgtgttttctaagagattttagatttattcttgtgatgtcttttcc |
218 |
Q |
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|||||| |||||||||||| || || || ||||||||||||||||| || ||||| || || ||||| ||||| | ||| ||| | |||| |||||||| |
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| T |
27731112 |
tgtttttgtaaattgatgttgcaaatagagctggttcttgttgtactagcccaatttgcttcctaagggatttcaaattcattttcttgatatcttttcc |
27731013 |
T |
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| Q |
219 |
tg |
220 |
Q |
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|| |
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| T |
27731012 |
tg |
27731011 |
T |
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