View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_114 (Length: 239)

Name: NF16177_low_114
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_114
NF16177_low_114
[»] chr6 (1 HSPs)
chr6 (30-117)||(33582517-33582604)
[»] chr3 (2 HSPs)
chr3 (30-114)||(36433031-36433115)
chr3 (49-117)||(38639905-38639973)
[»] chr2 (1 HSPs)
chr2 (32-115)||(32983698-32983781)
[»] chr7 (1 HSPs)
chr7 (30-114)||(28756093-28756177)
[»] chr5 (2 HSPs)
chr5 (42-114)||(36560510-36560582)
chr5 (30-117)||(9991667-9991754)
[»] scaffold0006 (1 HSPs)
scaffold0006 (63-117)||(148324-148378)
[»] chr1 (3 HSPs)
chr1 (63-117)||(13658563-13658617)
chr1 (158-208)||(50967024-50967074)
chr1 (126-213)||(50996886-50996975)
[»] chr8 (1 HSPs)
chr8 (52-117)||(21519285-21519350)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 33582604 - 33582517
Alignment:
Q  30 agaatttactgaaagtatgggcataatactataaatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatccgc 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  33582604 agaatttattgaaagtatgggcataatactataaatatagtaagtttaggggatgccatggcacctgcctgcccttgagaagatccgc 33582517  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 36433031 - 36433115
Alignment:
Q  30 agaatttactgaaagtatgggcataatactataaatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatc 114  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||    
T  36433031 agaatttactgtaagtatgggcataatgctataaatatagtaaattcaggtgatgccatggcacctgcctgcccttgagaagatc 36433115  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 38639973 - 38639905
Alignment:
Q  49 ggcataatactataaatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatccgc 117  Q
    ||||||||| | || ||||||||| ||||| |||||||||| ||||||||||||| |||  ||||||||    
T  38639973 ggcataatagtgtatatatagtaacttcaggggatgccatggcacctgcctgcccctgaagagatccgc 38639905  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 32983698 - 32983781
Alignment:
Q  32 aatttactgaaagtatgggcataatactataaatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatcc 115  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||    
T  32983698 aatttattgaaagtatggacataatactataaatatagtaagttcaggggttgccatgacaccttcctgcccttgagaagatcc 32983781  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 28756093 - 28756177
Alignment:
Q  30 agaatttactgaaagtatgggcataatactataaatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatc 114  Q
    |||||||| || || |||||||||||| ||||||||||||||| ||||  |||||||||| ||||||||||||||| ||||||||    
T  28756093 agaatttattgtaattatgggcataatgctataaatatagtaaattcaagggatgccatggcacctgcctgccctttagaagatc 28756177  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 36560582 - 36560510
Alignment:
Q  42 aagtatgggcataatactataaatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatc 114  Q
    ||||||||||||||| |||| |||||||||| ||||| |||||||||| |||||| |||||||||||||||||    
T  36560582 aagtatgggcataatgctatcaatatagtaaattcaggggatgccatgacacctgtctgcccttgagaagatc 36560510  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 9991754 - 9991667
Alignment:
Q  30 agaatttactgaaagtatgggcataatactataaatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatccgc 117  Q
    |||||||| || || ||||||||||||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||||||||||    
T  9991754 agaatttattgtaaatatgggcataatactgtatatatagtaaattcaggggatgccatggcacttgcctgccctagagaagatccgc 9991667  T

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Target: scaffold0006 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 148324 - 148378
Alignment:
Q  63 aatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatccgc 117  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  148324 aatatagtaagttcaggggatgccatggcacctgcctgcccttgagaagatccgc 148378  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 13658563 - 13658617
Alignment:
Q  63 aatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatccgc 117  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  13658563 aatatagtaagttcaggggatgccatggcacctgcctgcccttgagaagatccgc 13658617  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 50967074 - 50967024
Alignment:
Q  158 ctgcataccctagatgtcaaggtaatagtgacctctcttttatcacaccct 208  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| |||||||||    
T  50967074 ctgcacaccctagatgtcaaggtaatactgagctctcttttctcacaccct 50967024  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 50996975 - 50996886
Alignment:
Q  126 gaaaaacaatgagatagttccggcttc--gtggactgcataccctagatgtcaaggtaatagtgacctctcttttatcacacccttttca 213  Q
    ||||| |||||||||||| || |||||  ||| ||| ||||| ||||||||||||||||||   ||||||||||| ||||||||| ||||    
T  50996975 gaaaagcaatgagatagtaccagcttctggtgaactacatactctagatgtcaaggtaatatcaacctctcttttctcacaccctcttca 50996886  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 21519350 - 21519285
Alignment:
Q  52 ataatactataaatatagtaagttcagaggatgccatgtcacctgcctgcccttgagaagatccgc 117  Q
    ||||||||||| ||||||||| ||  | |||||||||| | |||||||| ||||||||||||||||    
T  21519350 ataatactatacatatagtaaatttgggggatgccatgacccctgcctgtccttgagaagatccgc 21519285  T

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