View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_117 (Length: 237)
Name: NF16177_low_117
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_117 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 44271536 - 44271772
Alignment:
| Q |
1 |
cataggacaaactcgtcaaatgatcatcatgtttaggataataataagatggcatgtttagtttaggacaccagaattaaaaaatgatcatatgaaatac |
100 |
Q |
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| T |
44271536 |
catagaacaaactcgtcaaatgatcatcatgtttaggataataataagatggcatgtttagtttaggacaccagaattaaaaaatgatcatatgaaatac |
44271635 |
T |
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| Q |
101 |
tacaacagacagaaccaatccaaaaatgaactgataataacaaagcatcaaagccaaaataatgaaattacctgattggcaagcccccaaaacaggacag |
200 |
Q |
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| T |
44271636 |
tacaacagacagaaccaatccaaaaatgaactgataataacaaagcatcaaagccaaaataatgaaattacctgattggcaagcccccaaaacaggacag |
44271735 |
T |
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| Q |
201 |
aaatcacaacactcccccacaattcagccataacata |
237 |
Q |
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| T |
44271736 |
aaatcacaacactcccccacaattcagccatgacata |
44271772 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 2808773 - 2808705
Alignment:
| Q |
169 |
tacctgattggcaagcccccaaaacaggacagaaatcacaacactcccccacaattcagccataacata |
237 |
Q |
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| T |
2808773 |
tacctgattagcaaaaccccaaaacagcacagaaacaaccacactcccccacaattcagccataacata |
2808705 |
T |
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