View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_118 (Length: 236)

Name: NF16177_low_118
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_118
NF16177_low_118
[»] chr5 (4 HSPs)
chr5 (19-220)||(38921529-38921729)
chr5 (19-211)||(35968502-35968683)
chr5 (36-80)||(16727903-16727947)
chr5 (42-80)||(16306739-16306777)
[»] chr1 (4 HSPs)
chr1 (19-195)||(35063434-35063609)
chr1 (19-80)||(26529582-26529643)
chr1 (19-72)||(36574036-36574089)
chr1 (42-79)||(49917485-49917522)
[»] chr7 (2 HSPs)
chr7 (19-220)||(41739696-41739896)
chr7 (42-79)||(25272069-25272106)
[»] chr4 (6 HSPs)
chr4 (19-220)||(30830001-30830200)
chr4 (19-220)||(52190144-52190356)
chr4 (146-216)||(31409574-31409643)
chr4 (36-80)||(31409401-31409445)
chr4 (36-72)||(52189277-52189313)
chr4 (94-142)||(8479843-8479891)
[»] chr8 (3 HSPs)
chr8 (42-220)||(17864490-17864679)
chr8 (42-80)||(32565560-32565598)
chr8 (19-79)||(3870842-3870902)
[»] chr2 (3 HSPs)
chr2 (19-80)||(4753602-4753663)
chr2 (19-72)||(31622039-31622092)
chr2 (42-72)||(36669089-36669119)
[»] chr3 (4 HSPs)
chr3 (42-80)||(36163480-36163518)
chr3 (99-147)||(19801947-19801995)
chr3 (148-195)||(19801986-19802032)
chr3 (43-72)||(20884324-20884353)
[»] chr6 (3 HSPs)
chr6 (19-80)||(30758798-30758859)
chr6 (19-79)||(18191820-18191880)
chr6 (43-80)||(21396392-21396429)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 38921529 - 38921729
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccgca 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  ||    
T  38921529 aaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggaccaaaatgacaaca 38921628  T
Q  119 atcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacctat 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  38921629 atcatgtttctgccatcatcttcttcaatcttcttcaatgcccccaattcc-ttcatcttctccaacactactcatgaactcatgatcaccaacacctat 38921727  T
Q  219 gc 220  Q
    ||    
T  38921728 gc 38921729  T

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Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 35968683 - 35968502
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccgca 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||  ||    
T  35968683 aaaactcccccaattattgttttgttagtcaaatgcatccaaaacgttaacttggtgttaactttgttatactcatagatgagggaccaaaatgacaaca 35968584  T
Q  119 atcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaa 211  Q
    |||||||||| ||| |||||||||          |||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  35968583 atcatgtttccgccatcatcttct----------tcaaggccccgaattcc-ttcatcttctccaactctactcatgaactcatgcccaccaa 35968502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 16727903 - 16727947
Alignment:
Q  36 tgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||    
T  16727903 tgttccgttagtcaaatgcatccaaaacattaacttgatgttaac 16727947  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 16306777 - 16306739
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  16306777 gttagtcaaatgcatctaaaacgttaacttggagttaac 16306739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 35063609 - 35063434
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  35063609 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgacaaca 35063510  T
Q  119 atcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  35063509 atcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcc-ttcatcttctccaacactactcatg 35063434  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 26529582 - 26529643
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    ||||||||| ||||  |||||  ||||||||||||||||||||||||||||||| |||||||    
T  26529582 aaaactccctcaatgtttgttctgttagtcaaatgcatccaaaacgttaacttgatgttaac 26529643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 36574036 - 36574089
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttg 72  Q
    ||||||||| ||||   |||| ||||||||||||||||||||||||||||||||    
T  36574036 aaaactccctcaatgtctgttccgttagtcaaatgcatccaaaacgttaacttg 36574089  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 49917485 - 49917522
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaa 79  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  49917485 gttagtcaaatgcatccaaaatgttaacttgatgttaa 49917522  T

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Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 41739696 - 41739896
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccgca 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||  ||    
T  41739696 aaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggatcaaaatgacaaca 41739795  T
Q  119 atcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacctat 218  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  41739796 atcatgtttctgccatcatctttttcaatcttcttcaatgcccccaattcc-ttcatcttctccaacactactcatgaactcatgctcaccagcacctat 41739894  T
Q  219 gc 220  Q
    ||    
T  41739895 gc 41739896  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 25272106 - 25272069
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaa 79  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  25272106 gttagtcaaatgcattcaaaacgttaacttagtgttaa 25272069  T

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Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 30830001 - 30830200
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccgca 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||    
T  30830001 aaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggaccaaaatga-caca 30830099  T
Q  119 atcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacctat 218  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30830100 atcatgtttctgccatcatctttttcaatcttcttcaatgccctcaattcc-ttcatcttcttcaacactactcatgaactcatgctcaccaacacctat 30830198  T

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Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 52190356 - 52190144
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaact------------ccgttatactcatagacgagggacc 106  Q
    ||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||| |            |||||||||||||||||||||||||    
T  52190356 aaaactcccccaatgtctgttttgttagtcaaatgcatccaaaacgttaacttggtgttaaatgtgctgatgtgtccgttatactcatagacgagggacc 52190257  T
Q  107 aaaatgaccgcaatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctc 206  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  52190256 aaaatgacaacaatcatgtttctgccttcatcttcttcaatcttcttcaatgccctcaattcc-ttcatcttctccaacactactcatgaactcatgctc 52190158  T
Q  207 accaacacctatgc 220  Q
    ||||| ||||||||    
T  52190157 accaatacctatgc 52190144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 31409574 - 31409643
Alignment:
Q  146 atcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacct 216  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||| |||| |||||||||||| ||||||||    
T  31409574 atcttcttcaatgcctccaattcctt-catcttctccaacactattcataaactcatgctcaacaacacct 31409643  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 31409401 - 31409445
Alignment:
Q  36 tgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  31409401 tgttccgttagtcaaatgcatccaaaacgttaacttggtgttaac 31409445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 52189277 - 52189313
Alignment:
Q  36 tgtttcgttagtcaaatgcatccaaaacgttaacttg 72  Q
    |||| ||||||||||||||||||||||||||||||||    
T  52189277 tgttccgttagtcaaatgcatccaaaacgttaacttg 52189313  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 8479843 - 8479891
Alignment:
Q  94 tagacgagggaccaaaatgaccgcaatcatgtttctgccttcatcttct 142  Q
    |||||||||||||||||||| |  ||| ||||| |||||||||||||||    
T  8479843 tagacgagggaccaaaatgatcagaattatgttcctgccttcatcttct 8479891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 17864679 - 17864490
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaact------------ccgttatactcatagacgagggaccaaaatgaccgcaatcatgtttct 129  Q
    |||||||||||||||||||||| ||||||||||||||| |            || |||||||||||||| ||||||||||||||| ||||||||||||||    
T  17864679 gttagtcaaatgcatccaaaacattaacttggtgttaattgtgttgatgtgtccattatactcatagactagggaccaaaatgacagcaatcatgtttct 17864580  T
Q  130 gccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacctatgc 220  Q
    |||||||||||||||||||||||||||||  | ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  17864579 gccttcatcttcttcaatcttcttcaatgttctcaattcc-ttcatcttcttcaacactactcatgaactcatgctcaccaacacctatgc 17864490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 32565598 - 32565560
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  32565598 gttagtcaaatgcatccaaaacgttaacttgatgttaac 32565560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 3870842 - 3870902
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaa 79  Q
    ||||||||||||||  ||||| |||||||||| | | ||||||||||||| || |||||||    
T  3870842 aaaactcccccaatagttgttccgttagtcaatttcgtccaaaacgttaagttcgtgttaa 3870902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 4753602 - 4753663
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    ||||||||| ||||   ||||| |||||||||||||||||||||||||||||||||||||||    
T  4753602 aaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacgttaacttggtgttaac 4753663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 31622092 - 31622039
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttg 72  Q
    ||||||||| ||||  ||||| |||| |||||||||||||||||||||||||||    
T  31622092 aaaactccctcaatgtttgttccgtttgtcaaatgcatccaaaacgttaacttg 31622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 36669119 - 36669089
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttg 72  Q
    |||||||||||||||||||||||||||||||    
T  36669119 gttagtcaaatgcatccaaaacgttaacttg 36669089  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 36163480 - 36163518
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36163480 gttagtcaaatgcatccaaaacgttaacttggtgttaac 36163518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 19801947 - 19801995
Alignment:
Q  99 gagggaccaaaatgaccgcaatcatgtttctgccttcatcttcttcaat 147  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  19801947 gagggaccaaaatgaccacaattatgtttctgccttcaacttcttcaat 19801995  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 19801986 - 19802032
Alignment:
Q  148 cttcttcaatgcccccaattcctttcatcttctccaactctactcatg 195  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||||    
T  19801986 cttcttcaatgcccccaattcc-ttcatcttctccatcactactcatg 19802032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 20884324 - 20884353
Alignment:
Q  43 ttagtcaaatgcatccaaaacgttaacttg 72  Q
    ||||||||||||||||||||||||||||||    
T  20884324 ttagtcaaatgcatccaaaacgttaacttg 20884353  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 30758859 - 30758798
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    ||||||||| ||||   ||||| |||||||||||||||||||||| ||||||||||||||||    
T  30758859 aaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacattaacttggtgttaac 30758798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 18191820 - 18191880
Alignment:
Q  19 aaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaa 79  Q
    ||||||||||||||   ||||  ||||||||||||||||||||||||||||||||| ||||    
T  18191820 aaaactcccccaatgtatgttatgttagtcaaatgcatccaaaacgttaacttggtattaa 18191880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 21396392 - 21396429
Alignment:
Q  43 ttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  21396392 ttagtcaaatacatccaaaacgctaacttggtgttaac 21396429  T

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