View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_119 (Length: 236)
Name: NF16177_low_119
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_119 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 48529145 - 48528929
Alignment:
| Q |
1 |
caatgtttaaaatactttctatttgataaattactttgccaataacagaaacatgtttgacttgaaaaaggactgcaaattatgtt-cattctagtcttg |
99 |
Q |
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| T |
48529145 |
caatgtttgaaatactttctatttgataaattactttgccaataacaaaaacatgtttgacttgaaaaagggctgcaaattatgtttcattctagtcttg |
48529046 |
T |
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| Q |
100 |
taattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagactttgagcagac |
199 |
Q |
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| T |
48529045 |
taattgtatatgtttggtgtttagttgtatttaaaaagcatgttggtgtgccatattctaggtaacaaatgatttgtatcatctaagactttgagcagac |
48528946 |
T |
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| Q |
200 |
aaacctgttcacctatc |
216 |
Q |
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| | ||||||||||||| |
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| T |
48528945 |
agaactgttcacctatc |
48528929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 49 - 216
Target Start/End: Complemental strand, 48531858 - 48531691
Alignment:
| Q |
49 |
aaacatgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgt |
148 |
Q |
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| T |
48531858 |
aaacatgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgt |
48531759 |
T |
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| Q |
149 |
gccagattcttggtaacatatgatttgtatcatctaagactttgagcagacaaacctgttcacctatc |
216 |
Q |
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| T |
48531758 |
gccatattcttggtaacaaatgatttgtatcatataagactttgagcagacaaacctgttcacctatc |
48531691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 48532009 - 48531969
Alignment:
| Q |
1 |
caatgtttaaaatactttctatttgataaattactttgcca |
41 |
Q |
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| T |
48532009 |
caatgtttaaaatactttctatttgataaattactttgcca |
48531969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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